| Allegheny River | 274.4 | 2,408 |
| Anderson Creek | 23.6 | 24 |
| Antietam Creek | 0.2 | 32 |
| Antietam Creek - East Branch | 15.9 | 16 |
| Antietam Creek - West Branch | 15.5 | 16 |
| Aquashicola Creek | 20.9 | 21 |
| Armstrong Creek | 16.7 | 17 |
| Ashtabula River - East Branch | 0.1 | 0 |
| Aughwick Creek | 30.8 | 131 |
| Babb Creek | 21.8 | 22 |
| Back Creek | 16.7 | 17 |
| Bald Eagle Creek | 55.3 | 197 |
| Bear Creek (Allegheny River tributary) | 16.2 | 16 |
| Bear Creek (Clarion River tributary) | 17 | 17 |
| Bear Creek (Lehigh River tributary) | 17.1 | 17 |
| Beaver River | 21.5 | 451 |
| Beaver Run | 19.6 | 20 |
| Beech Creek | 27.3 | 40 |
| Beech Creek - South Fork | 13 | 13 |
| Bermudian Creek | 25 | 36 |
| Bermudian Creek - North Branch | 11.4 | 11 |
| Big Cove Creek | 19.9 | 20 |
| Big Elk Creek | 9.3 | 9 |
| Big Mill Creek | 16.7 | 17 |
| Big Sandy Creek (Cheat River tributary) | 12.6 | 24 |
| Big Wapwallopen Creek | 25.9 | 26 |
| Black Creek | 22.7 | 23 |
| Blacklegs Creek | 15.7 | 16 |
| Blacklick Creek | 32.9 | 139 |
| Blacklick Creek - North Branch | 19.8 | 20 |
| Blacklick Creek - South Branch | 19.6 | 20 |
| Blacklog Creek | 28.5 | 29 |
| Black Moshannon Creek | 12.8 | 13 |
| Blacks Creek | 16.3 | 16 |
| Blockhouse Creek | 16.2 | 33 |
| Bobs Creek | 21.7 | 22 |
| Bowman Creek | 26.4 | 26 |
| Brandywine Creek | 9.4 | 87 |
| Brandywine Creek - East Branch | 27.4 | 27 |
| Brandywine Creek - West Branch | 33.1 | 50 |
| Brodhead Creek | 21.8 | 59 |
| Brokenstraw Creek | 39.6 | 57 |
| Brush Creek (Connoquenessing Creek tributary) | 22.1 | 22 |
| Brush Creek (Juniata River - Raystown Branch tributary) | 24.6 | 25 |
| Brush Creek (Turtle Creek tributary) | 21.4 | 21 |
| Brush Creek (Wills Creek tributary) | 15.3 | 15 |
| Buck Run | 17.3 | 17 |
| Buffalo Creek (Allegheny River tributary) | 37.1 | 37 |
| Buffalo Creek (Juniata River tributary) | 31.5 | 32 |
| Buffalo Creek (Ohio River tributary) | 21.9 | 22 |
| Bush Kill | 30.1 | 67 |
| Bushkill Creek | 22.1 | 22 |
| Calkins Creek | 0.7 | 21 |
| Calkins Creek - North Branch | 11.6 | 12 |
| Calkins Creek - South Branch | 9.1 | 9 |
| Casselman River | 47.7 | 85 |
| Catawissa Creek | 42 | 42 |
| Cayuta Creek | 2 | 2 |
| Chartiers Creek | 48.8 | 81 |
| Cheat River | 3.5 | 27 |
| Chemung River | 9.7 | 145 |
| Cherry Creek | 15.5 | 16 |
| Chest Creek | 40.3 | 40 |
| Chester Creek | 21.1 | 21 |
| Chillisquaque Creek | 20.4 | 20 |
| Chiques Creek | 31.8 | 52 |
| Choconut Creek | 8 | 8 |
| Christina River | 1.8 | 118 |
| Clarion River | 102.6 | 312 |
| Clarion River - East Branch | 21.4 | 21 |
| Clarion River - West Branch | 20.8 | 21 |
| Clark Creek | 31.7 | 32 |
| Clearfield Creek | 73.4 | 88 |
| Clover Creek | 24.4 | 24 |
| Cocalico Creek | 27.2 | 62 |
| Cocolamus Creek | 20.2 | 20 |
| Codorus Creek | 42.8 | 79 |
| Codorus Creek - East Branch | 14.1 | 14 |
| Codorus Creek - South Branch | 21.9 | 36 |
| Conemaugh River | 52.4 | 315 |
| Conestoga River | 60.7 | 170 |
| Conewago Creek - South Branch | 23.1 | 23 |
| Conewago Creek (Susquehanna River tributary) | 23 | 23 |
| Conewago Creek (Susquehanna River tributary) | 80.4 | 165 |
| Conewango Creek | 13.4 | 21 |
| Conneaut Creek | 38.3 | 55 |
| Conneaut Creek - West Branch | 16.5 | 17 |
| Conneaut Outlet | 16.8 | 17 |
| Conneauttee Creek | 14.6 | 32 |
| Connoquenessing Creek | 60 | 233 |
| Conococheague Creek | 58.2 | 150 |
| Conococheague Creek - West Branch | 60 | 75 |
| Conodoguinet Creek | 105.4 | 105 |
| Conowingo Creek | 16 | 16 |
| Cove Creek | 20 | 20 |
| Cowanesque River | 40.6 | 46 |
| Cowanshannock Creek | 25.8 | 26 |
| Crooked Creek (Allegheny River tributary) | 59.8 | 95 |
| Crooked Creek (Tioga River tributary) | 26.3 | 26 |
| Cross Creek | 16.3 | 16 |
| Crum Creek | 24.1 | 24 |
| Cussewago Creek | 36.9 | 37 |
| Darby Creek | 26.7 | 27 |
| Deep Creek | 22.9 | 23 |
| Deer Creek (Allegheny River tributary) | 17.7 | 18 |
| Deer Creek (Susquehanna River tributary) | 7.6 | 8 |
| Delaware River | 254.1 | 1,697 |
| Delaware River - West Branch | 7 | 7 |
| Dunlap Creek | 18.3 | 18 |
| Dunning Creek | 27.8 | 50 |
| Dyberry Creek | 7.3 | 29 |
| Dyberry Creek - East Branch | 8.9 | 9 |
| Dyberry Creek - West Branch | 13.1 | 13 |
| East Hickory Creek | 16.4 | 16 |
| East Licking Creek | 24.1 | 24 |
| East Sandy Creek | 26.4 | 26 |
| Elk Creek (Clarion River tributary) | 16.4 | 16 |
| Elk Creek (Lake Erie tributary) | 32.5 | 33 |
| Elk Creek (Pine Creek (Penns Creek tributary)) | 19.2 | 19 |
| Enlow Fork | 15.5 | 16 |
| Equinunk Creek | 16 | 16 |
| Evitts Creek | 19 | 19 |
| Fifteenmile Creek | 5.8 | 6 |
| Fish Creek - Pennsylvania Fork | 10.3 | 10 |
| Fishing Creek (Bald Eagle Creek tributary) | 42.9 | 59 |
| Fishing Creek (Susquehanna River tributary) | 30.5 | 96 |
| Fishing Creek - West Branch (Susquehanna River tributary) | 12.3 | 12 |
| Fourmile Run | 16.5 | 17 |
| French Creek (Allegheny River tributary) | 88.9 | 350 |
| French Creek (Schuylkill River tributary) | 22.6 | 23 |
| French Creek - South Branch (Allegheny River tributary) | 26.8 | 27 |
| French Creek - West Branch (Allegheny River tributary) | 22.1 | 22 |
| Genesee River | 12.9 | 13 |
| Georges Creek | 18.3 | 18 |
| Great Trough Creek | 30.8 | 45 |
| Gunpowder Falls | 1.9 | 2 |
| Hammer Creek | 19.2 | 19 |
| Harmon Creek | 9.2 | 9 |
| Harveys Creek | 18.8 | 19 |
| Hokendauqua Creek | 16.9 | 17 |
| Honeoye Creek (Oswayo Creek tributary) | 6.5 | 7 |
| Honey Creek | 20.3 | 20 |
| Huntington Creek | 29.4 | 29 |
| Indian Creek | 31 | 31 |
| Jacks Creek | 20 | 20 |
| Jacobs Creek | 33.4 | 33 |
| Jordan Creek | 34.1 | 59 |
| Juniata River | 104.5 | 911 |
| Juniata River - Frankstown Branch | 46 | 70 |
| Juniata River - Raystown Branch | 123.3 | 282 |
| Kettle Creek | 46.4 | 46 |
| Kinzua Creek | 36.3 | 51 |
| Kinzua Creek - South Branch | 15 | 15 |
| Kishacoquillas Creek | 24 | 44 |
| Kiskiminetas River | 26.9 | 444 |
| Kreutz Creek | 18.5 | 19 |
| Lackawanna River | 40.7 | 106 |
| Lackawanna River - East Branch | 13.3 | 13 |
| Lackawanna River - West Branch | 11 | 11 |
| Lackawaxen River | 27.1 | 149 |
| Lackawaxen River - West Branch | 25.6 | 55 |
| Lake Creek | 18.3 | 18 |
| Larrys Creek | 22.9 | 23 |
| Laurel Hill Creek | 37.7 | 38 |
| Laurel Run (Shermans Creek tributary) | 18 | 18 |
| Laurel Run (Sinnemahoning Creek - Bennett Branch tributary) | 16.5 | 17 |
| LeBoeuf Creek | 18.8 | 19 |
| Lehigh River | 109.8 | 388 |
| Licking Creek | 14.6 | 15 |
| Lick Run (Potomac River tributary) | 46.9 | 67 |
| Lick Run (Susquehanna River - West Branch tributary) | 17.3 | 17 |
| Little Aughwick Creek | 10.8 | 34 |
| Little Aughwick Creek - North Branch | 8.4 | 8 |
| Little Aughwick Creek - South Branch | 14.8 | 15 |
| Little Beaver Creek | 1.2 | 25 |
| Little Beaver Creek - North Fork | 23.6 | 24 |
| Little Brokenstraw Creek | 17.4 | 17 |
| Little Bush Kill | 19.6 | 20 |
| Little Chartiers Creek | 15.5 | 16 |
| Little Chiques Creek | 20.5 | 21 |
| Little Clearfield Creek | 14.6 | 15 |
| Little Conemaugh River | 29.7 | 57 |
| Little Conemaugh River - North Branch | 11.4 | 11 |
| Little Conemaugh River - South Fork | 15.4 | 15 |
| Little Conestoga Creek | 21.1 | 21 |
| Little Conewago Creek | 24.8 | 25 |
| Little Conneauttee Creek | 17.1 | 17 |
| Little Connoquenessing Creek | 18.8 | 19 |
| Little Conococheague Creek | 1.2 | 1 |
| Little Elk Creek | 8.5 | 9 |
| Little Fishing Creek | 15.9 | 16 |
| Little Fishing Creek | 23.5 | 24 |
| Little Juniata Creek | 13.7 | 14 |
| Little Juniata River | 32.1 | 49 |
| Little Lehigh Creek | 24.8 | 25 |
| Little Loyalsock Creek | 19.4 | 19 |
| Little Mahoning Creek | 36.1 | 36 |
| Little Muncy Creek | 23.8 | 24 |
| Little Neshaminy Creek | 16.1 | 16 |
| Little Neshannock Creek | 14.5 | 26 |
| Little Neshannock Creek - West Branch | 11.5 | 12 |
| Little North East Creek | 0.3 | 0 |
| Little Pine Creek | 15.9 | 48 |
| Little Sandy Creek (Big Sandy Creek tributary) | 11.3 | 11 |
| Little Sandy Creek (Redbank Creek tributary) | 20.9 | 21 |
| Little Sandy Creek (Sandy Creek tributary) | 11.3 | 11 |
| Little Schuylkill River | 30.6 | 31 |
| Little Sewickley Creek | 14 | 14 |
| Little Shamokin Creek | 14.8 | 15 |
| Little Shenango River | 28.3 | 28 |
| Little Sugar Creek | 19.5 | 20 |
| Little Swatara Creek | 26.1 | 26 |
| Little Tenmile Creek | 12.8 | 13 |
| Little Toby Creek | 28.9 | 29 |
| Little Tonoloway Creek | 20.2 | 20 |
| Little Trough Creek | 13.7 | 14 |
| Little Wapwallopen Creek | 18.6 | 19 |
| Little Wheeling Creek | 0.8 | 5 |
| Little Wiconisco Creek | 13.7 | 14 |
| Little Wills Creek | 16.2 | 16 |
| Little Yankee Run | 0 | 0 |
| Little Yellow Creek | 12.9 | 13 |
| Lizard Creek | 17.4 | 17 |
| Lost Creek | 17.5 | 18 |
| Lower Little Swatara Creek | 12.1 | 12 |
| Loyalhanna Creek | 49.9 | 66 |
| Loyalsock Creek | 64.6 | 84 |
| Lycoming Creek | 37.6 | 38 |
| Mahanoy Creek | 51.8 | 52 |
| Mahantango Creek | 36.4 | 83 |
| Mahantango Creek - North Branch | 13.3 | 13 |
| Mahantango Creek - West Branch | 20.3 | 34 |
| Mahoning Creek (Allegheny River tributary) | 64.7 | 129 |
| Mahoning Creek - East Branch | 13.2 | 13 |
| Mahoning Creek (Lehigh River tributary) | 16.7 | 17 |
| Mahoning River | 11.8 | 12 |
| Maiden Creek | 20.3 | 38 |
| Manada Creek | 17.2 | 17 |
| Manatawny Creek | 18.2 | 18 |
| Marsh Creek (Bald Eagle Creek tributary) | 17.5 | 18 |
| Marsh Creek (Monocacy River tributary) | 25.5 | 26 |
| Martins Creek | 20.3 | 20 |
| Marvin Creek | 18.9 | 19 |
| McMichael Creek | 22.6 | 38 |
| Mehoopany Creek | 26.8 | 42 |
| Mehoopany Creek - North Branch | 14.7 | 15 |
| Meshoppen Creek | 30.6 | 31 |
| Middle Creek | 14.3 | 14 |
| Middle Creek (Cocalico Creek tributary) | 15.5 | 16 |
| Middle Creek (Lackawaxen River tributary) | 21.3 | 21 |
| Middle Creek (Penns Creek tributary) | 29.7 | 30 |
| Middle Wheeling Creek | 4.6 | 5 |
| Mill Creek (Clarion River tributary) | 20.8 | 21 |
| Mill Creek (Conestoga River tributary) | 26.7 | 27 |
| Mill Creek (Redbank Creek tributary) | 20.2 | 20 |
| Mill Creek (Tioga River tributary) | 18.7 | 19 |
| Millstone Creek | 1.9 | 29 |
| Millstone Creek - East Branch | 10.7 | 11 |
| Millstone Creek - West Branch | 16.3 | 16 |
| Monocacy Creek | 18.9 | 19 |
| Monongahela River | 92.5 | 644 |
| Moshannon Creek | 57.4 | 70 |
| Mosquito Creek | 21.8 | 22 |
| Mountain Creek | 21 | 21 |
| Muddy Creek (French Creek (Allegheny River tributary)) | 24.9 | 25 |
| Muddy Creek (Monongahela River tributary) | 16 | 16 |
| Muddy Creek - North Branch (Susquehanna River tributary) | 11.2 | 11 |
| Muddy Creek (Slippery Rock Creek tributary) | 22.9 | 23 |
| Muddy Creek - South Branch (Susquehanna River tributary) | 10.4 | 10 |
| Muddy Creek (Susquehanna River tributary) | 17.6 | 39 |
| Mud Run | 15.5 | 16 |
| Muncy Creek | 36 | 60 |
| Nescopeck Creek | 37.6 | 60 |
| Neshaminy Creek | 40.7 | 57 |
| Neshannock Creek | 44.2 | 70 |
| North East Creek | 3.3 | 4 |
| Octoraro Creek | 13.3 | 47 |
| Octoraro Creek - East Branch | 18.1 | 18 |
| Octoraro Creek - West Branch | 15.3 | 15 |
| Ohio River | 40.5 | 3,776 |
| Oil Creek | 43 | 56 |
| Oil Creek - East Branch | 12.8 | 13 |
| Oswayo Creek | 29.3 | 36 |
| Penns Creek | 67 | 154 |
| Pennypack Creek | 22.6 | 23 |
| Pequea Creek | 49.4 | 49 |
| Perkiomen Creek | 37.6 | 128 |
| Perkiomen Creek - East Branch | 24.5 | 25 |
| Perkiomen Creek - West Branch | 14.5 | 15 |
| Peters Creek | 16.8 | 17 |
| Pickering Creek | 15.4 | 15 |
| Pine Creek (Allegheny River tributary) | 23.4 | 23 |
| Pine Creek (Mahantango Creek tributary) | 23.8 | 47 |
| Pine Creek (Penns Creek tributary) | 18.4 | 38 |
| Pine Creek (Susquehanna River - West Branch tributary) | 87.2 | 174 |
| Pine Creek - West Branch (Susquehanna River - West Branch tributary) | 17 | 17 |
| Piney Creek (Clarion River tributary) | 22.4 | 22 |
| Piney Creek (Monocacy River tributary) | 4.2 | 4 |
| Pithole Creek | 17.4 | 17 |
| Plum Creek | 5.2 | 35 |
| Plum Creek - North Branch | 12.5 | 13 |
| Plum Creek - South Branch | 17.3 | 17 |
| Pocono Creek | 14.9 | 15 |
| Pohopoco Creek | 29.1 | 29 |
| Potato Creek | 27.6 | 47 |
| Powells Creek | 16.7 | 17 |
| Pymatuning Creek | 6.6 | 7 |
| Quemahoning Creek | 21.2 | 21 |
| Quittapahilla Creek | 16.8 | 17 |
| Raccoon Creek | 48 | 48 |
| Redbank Creek | 53.3 | 154 |
| Redbank Creek - North Fork | 21.1 | 21 |
| Redstone Creek | 28.4 | 28 |
| Ridley Creek | 23.1 | 23 |
| Roaring Brook | 21.7 | 22 |
| Roaring Creek | 20.7 | 38 |
| Roaring Creek - South Branch | 17.6 | 18 |
| Robinson Run | 16.5 | 17 |
| Rock Creek | 18.9 | 19 |
| Sacony Creek | 17.5 | 18 |
| Salmon Creek | 18.2 | 18 |
| Sandy Creek | 35.9 | 61 |
| Sandy Lick Creek | 38.8 | 39 |
| Saucon Creek | 17 | 17 |
| Saw Creek | 17.7 | 18 |
| Schrader Creek | 23.4 | 23 |
| Schuylkill River | 135.8 | 465 |
| Schuylkill River - West Branch | 12.9 | 13 |
| Sewickley Creek | 30.5 | 45 |
| Shamokin Creek | 32.4 | 47 |
| Shaver Creek | 19.6 | 20 |
| Shenango River | 78.9 | 184 |
| Shermans Creek | 53.7 | 72 |
| Shohola Creek | 29 | 29 |
| Sideling Hill Creek (Aughwick Creek tributary) | 21.9 | 38 |
| Sideling Hill Creek - East Branch (Potomac River tributary) | 12.6 | 13 |
| Sideling Hill Creek (Potomac River tributary) | 9.3 | 33 |
| Sideling Hill Creek - West Branch (Potomac River tributary) | 10.7 | 11 |
| Sinking Creek | 19.8 | 20 |
| Sinnemahoning Creek | 15.7 | 183 |
| Sinnemahoning Creek - Bennett Branch | 43.8 | 60 |
| Sinnemahoning Creek - Driftwood Branch | 36.4 | 57 |
| Sinnemahoning Creek - East Fork | 17 | 17 |
| Sinnemahoning Creek - First Fork | 33.4 | 50 |
| Skippack Creek | 15.7 | 16 |
| Slippery Rock Creek | 51.4 | 117 |
| Slippery Rock Creek - South Branch | 14.5 | 15 |
| Snake Creek | 15.3 | 15 |
| South Sandy Creek | 13.6 | 14 |
| Spring Brook | 18.9 | 19 |
| Spring Creek | 25.3 | 25 |
| Spruce Creek | 16.5 | 17 |
| Standing Stone Creek | 34.3 | 48 |
| Standing Stone Creek - East Branch | 13.6 | 14 |
| Starrucca Creek | 18.5 | 19 |
| Stillwater Creek | 7.1 | 7 |
| Stony Creek | 23.4 | 23 |
| Stonycreek River | 46 | 67 |
| Stump Creek | 14.9 | 15 |
| Sugar Creek (French Creek (Allegheny River tributary)) | 23.4 | 42 |
| Sugar Creek (Susquehanna River tributary) | 32.1 | 32 |
| Sugar Run | 15.1 | 15 |
| Sugar Run Creek | 7.9 | 23 |
| Susquehanna River | 299.6 | 5,251 |
| Susquehanna River - West Branch | 243.3 | 1,402 |
| Swamp Creek | 18.7 | 19 |
| Swatara Creek | 73.1 | 157 |
| Tenmile Creek | 36.5 | 83 |
| Tenmile Creek - South Fork | 33.3 | 33 |
| Thorn Creek | 15.8 | 16 |
| Tioga River | 44.1 | 135 |
| Tionesta Creek | 39.3 | 112 |
| Tionesta Creek - East Branch | 18.5 | 19 |
| Tionesta Creek - South Branch | 12.5 | 31 |
| Tionesta Creek - West Branch | 23.7 | 24 |
| Toby Creek | 16.4 | 16 |
| Tobyhanna Creek | 29.9 | 50 |
| Tohickon Creek | 29.5 | 30 |
| Toms Creek | 10.8 | 25 |
| Tonoloway Creek | 28.1 | 48 |
| Towanda Creek | 33 | 88 |
| Towanda Creek - North Branch | 14.7 | 15 |
| Towanda Creek - South Branch | 16.4 | 16 |
| Town Creek | 10.1 | 10 |
| Troups Creek | 5.4 | 5 |
| Tulpehocken Creek | 39.5 | 40 |
| Tunkhannock Creek | 19.6 | 20 |
| Tunkhannock Creek | 42.4 | 105 |
| Tunkhannock Creek - East Branch | 19.3 | 19 |
| Tunkhannock Creek - South Branch | 23.2 | 23 |
| Tunungwant Creek | 3.4 | 26 |
| Tunungwant Creek - East Branch | 12.6 | 13 |
| Tunungwant Creek - West Branch | 10.1 | 10 |
| Turtle Creek | 20.1 | 42 |
| Tuscarora Creek | 49.2 | 73 |
| Twentymile Creek | 4 | 4 |
| Two Lick Creek | 28.3 | 67 |
| Unami Creek | 16.5 | 17 |
| Upper Little Swatara Creek | 11.5 | 12 |
| Wallenpaupack Creek | 30 | 46 |
| Wallenpaupack Creek - West Branch | 15.8 | 16 |
| Walnut Creek | 22 | 22 |
| Wappasening Creek | 17.6 | 18 |
| West Creek | 20.4 | 20 |
| White Clay Creek | 3.7 | 29 |
| White Clay Creek - East Branch | 13.4 | 13 |
| White Clay Creek - Middle Branch | 11.4 | 11 |
| White Deer Creek | 28.1 | 28 |
| White Deer Hole Creek | 20.5 | 21 |
| Whiteley Creek | 23.2 | 23 |
| Wiconisco Creek | 42.8 | 57 |
| Wills Creek | 31.8 | 63 |
| Wissahickon Creek | 24.4 | 24 |
| Wolf Creek | 27.9 | 28 |
| Wolf Run | 3.2 | 55 |
| Woodcock Creek | 22 | 22 |
| Wooden Bridge Creek | 16.1 | 16 |
| Wyalusing Creek | 19.3 | 60 |
| Wyalusing Creek - East Branch | 15.1 | 15 |
| Wyalusing Creek - Middle Branch | 11.8 | 12 |
| Wyalusing Creek - North Branch | 13.9 | 14 |
| Wysox Creek | 15.1 | 15 |
| Yellow Breeches Creek | 56.2 | 77 |
| Yellow Creek (Juniata River - Raystown Branch tributary) | 20 | 20 |
| Yellow Creek (Two Lick Creek tributary) | 25.8 | 39 |
| Youghiogheny River | 84.8 | 279 |
| Young Womans Creek | 11.4 | 23 |
| Young Womans Creek - Left Branch | 11.3 | 11 |