| Abram Creek | 19.4 | 19 |
| Anthony Creek | 15.5 | 59 |
| Anthony Creek - Middle Fork | 15.2 | 15 |
| Anthony Creek - North Fork | 11.6 | 12 |
| Back Creek (Potomac River tributary) | 34.3 | 34 |
| Beech Fork | 28.7 | 29 |
| Big Beaver Creek | 17 | 17 |
| Big Coal River | 39.7 | 98 |
| Big Harts Creek | 13 | 13 |
| Big Sandy Creek (Cheat River tributary) | 18.7 | 33 |
| Big Sandy Creek (Elk River tributary) | 25.1 | 25 |
| Big Sandy River | 27.1 | 308 |
| Big Ugly Creek | 18.7 | 19 |
| Bingamon Creek | 15.1 | 15 |
| Birch River | 36.1 | 54 |
| Black Fork | 4.5 | 168 |
| Blackwater River | 34.3 | 34 |
| Blue Creek | 17.3 | 17 |
| Bluestone River | 65.3 | 82 |
| Bonds Creek | 18.7 | 19 |
| Brush Creek | 16.7 | 17 |
| Brushy Fork | 16 | 16 |
| Buckeye Creek | 14.4 | 14 |
| Buckhannon River | 45.4 | 109 |
| Buckhannon River - Left Fork | 17.2 | 17 |
| Buckhannon River - Right Fork | 16.8 | 29 |
| Buckhannon River - Right Fork - Left Fork | 12.2 | 12 |
| Buffalo Creek (Elk River tributary) | 25.7 | 26 |
| Buffalo Creek (Guyandotte River tributary) | 19.1 | 19 |
| Buffalo Creek (Monongahela River tributary) | 29.9 | 30 |
| Buffalo Creek (Ohio River tributary) | 18.5 | 19 |
| Cabin Creek | 21.9 | 22 |
| Cacapon River | 81 | 201 |
| Cedar Creek | 34.8 | 35 |
| Cheat River | 74.7 | 397 |
| Cherry River | 10.7 | 61 |
| Cherry River - North Fork | 17.8 | 18 |
| Cherry River - South Fork | 17 | 17 |
| Clear Fork (Big Coal River tributary) | 23.5 | 24 |
| Clear Fork (Guyandotte River tributary) | 29.6 | 54 |
| Coal River | 18.9 | 242 |
| Cranberry River | 24.9 | 25 |
| Cross Creek | 7.3 | 7 |
| Davis Creek | 15.5 | 16 |
| Deckers Creek | 24.6 | 25 |
| Deer Creek | 19.2 | 19 |
| Dry Fork (Black Fork tributary) | 39.3 | 129 |
| Dry Fork (Tug Fork tributary) | 36 | 36 |
| Dunloup Creek | 16 | 16 |
| East River | 24.1 | 24 |
| Eighteenmile Creek | 32.8 | 33 |
| Elk Creek | 31.8 | 48 |
| Elk Fork | 15.6 | 16 |
| Elkhorn Creek | 23.7 | 24 |
| Elk River | 175.6 | 442 |
| Elk River - Back Fork | 23.2 | 23 |
| Enlow Fork | 1 | 1 |
| Falling Rock Creek | 16.3 | 16 |
| Fink Creek | 20.7 | 21 |
| Fish Creek | 26.9 | 59 |
| Fish Creek - Pennsylvania Fork | 9.5 | 10 |
| Fish Creek - West Virginia Fork | 22.8 | 23 |
| Fishing Creek | 23.3 | 81 |
| Fishing Creek - North Fork | 16.4 | 16 |
| Fishing Creek - South Fork | 21 | 21 |
| French Creek | 17.3 | 17 |
| Gauley River | 106.2 | 416 |
| Glade Creek | 23.3 | 23 |
| Glady Fork | 31.9 | 32 |
| Goose Creek | 25.8 | 26 |
| Grave Creek | 20.9 | 34 |
| Greenbrier River | 154 | 387 |
| Greenbrier River - East Fork | 20.4 | 20 |
| Greenbrier River - West Fork | 19.3 | 19 |
| Guyan Creek | 15.5 | 16 |
| Guyandotte River | 168.7 | 527 |
| Hackers Creek | 25.7 | 26 |
| Hans Creek | 16.4 | 16 |
| Harmon Creek | 7.5 | 8 |
| Henry Fork | 24.5 | 25 |
| Holly River | 3.9 | 50 |
| Holly River - Left Fork | 23.6 | 24 |
| Holly River - Right Fork | 22.4 | 22 |
| Hominy Creek | 24.9 | 25 |
| Horseshoe Run | 16 | 16 |
| Howard Creek | 15.4 | 15 |
| Huff Creek | 20.7 | 21 |
| Hughes River | 14.2 | 188 |
| Hughes River - North Fork | 55.2 | 74 |
| Hughes River - South Fork | 55.2 | 74 |
| Hurricane Creek | 25 | 25 |
| Indian Creek (Guyandotte River tributary) | 20.2 | 20 |
| Indian Creek (Hughes River - South Fork tributary) | 19.1 | 19 |
| Indian Creek (New River tributary) | 33.6 | 50 |
| Island Creek | 18.7 | 19 |
| Kanawha River | 97.5 | 2,191 |
| Knapp Creek | 29.6 | 30 |
| Laurel Creek (Cherry River tributary) | 15.7 | 16 |
| Laurel Creek (Elk River tributary) | 21.2 | 21 |
| Laurel Fork (Clear Fork (Guyandotte River tributary)) | 24.4 | 24 |
| Laurel Fork (Dry Fork (Black Fork tributary)) | 37.8 | 38 |
| Laurel Fork (Pigeon Creek tributary) | 15.7 | 16 |
| Laurel Fork (Potomac River - South Branch - North Fork tributary) | 1.8 | 2 |
| Leading Creek (Little Kanawha River tributary) | 30.7 | 51 |
| Leading Creek (Tygart Valley River tributary) | 21.3 | 21 |
| Lee Creek | 2.4 | 36 |
| Lee Creek - North Fork | 21.3 | 21 |
| Lee Creek - South Fork | 12 | 12 |
| Little Birch River | 17.7 | 18 |
| Little Cacapon River | 25.1 | 25 |
| Little Clear Creek | 15.3 | 15 |
| Little Coal River | 27.6 | 125 |
| Little Fishing Creek | 20.6 | 21 |
| Little Huff Creek | 15.8 | 16 |
| Little Kanawha River | 172 | 757 |
| Little Kanawha River - West Fork | 46 | 87 |
| Little Kanawha River - West Fork - Left Fork | 16.7 | 17 |
| Little Mill Creek | 11.4 | 11 |
| Little Sandy Creek (Big Sandy Creek (Cheat River tributary)) | 12.7 | 13 |
| Little Sandy Creek (Big Sandy Creek tributary) | 1.3 | 1 |
| Little Sandy Creek (Elk River tributary) | 18.4 | 18 |
| Little Tenmile Creek | 13.1 | 13 |
| Little Wheeling Creek | 10.4 | 22 |
| Loop Creek | 20.4 | 20 |
| Lost River | 31.1 | 31 |
| Lunice Creek | 7.3 | 31 |
| Lunice Creek - North Fork | 12.7 | 13 |
| Lunice Creek - South Fork | 11.1 | 11 |
| Marrowbone Creek | 15.2 | 15 |
| Marsh Fork | 35 | 35 |
| McElroy Creek | 20.2 | 20 |
| McKim Creek | 17.9 | 18 |
| Meadow Branch | 16.6 | 17 |
| Meadow Creek | 16.3 | 16 |
| Meadow River | 62 | 77 |
| Meathouse Fork | 19.9 | 20 |
| Middle Fork | 15.1 | 15 |
| Middle Fork River | 35.4 | 51 |
| Middle Fork River - Right Fork | 15.4 | 15 |
| Middle Grave Creek | 12.8 | 13 |
| Middle Island Creek | 75.8 | 148 |
| Middle Wheeling Creek | 11.2 | 11 |
| Mill Creek (Ohio River tributary) | 29.7 | 72 |
| Mill Creek (Potomac River - South Branch tributary) | 2.5 | 30 |
| Mill Creek (Tygart Valley River tributary) | 16.3 | 16 |
| Monongahela River | 37.9 | 1,175 |
| Muddlety Creek | 23.5 | 24 |
| Muddy Creek (Cheat River tributary) | 16 | 16 |
| Muddy Creek (Greenbrier River tributary) | 21.9 | 22 |
| Mud River | 82.8 | 108 |
| Mud River - Trace Fork | 25 | 25 |
| New Creek | 18.3 | 18 |
| New River (Kanawha River tributary) | 89.6 | 708 |
| North Mill Creek | 13.4 | 13 |
| North River | 52.5 | 71 |
| Ohio River | 276.1 | 6,028 |
| Oldtown Creek | 23.7 | 24 |
| Opequon Creek | 34.1 | 34 |
| Paint Creek | 42 | 42 |
| Parchment Creek | 15.1 | 15 |
| Patterson Creek | 51.2 | 51 |
| Peters Creek | 19.1 | 19 |
| Pigeon Creek | 32 | 48 |
| Piney Creek | 35.4 | 35 |
| Pinnacle Creek | 27.4 | 27 |
| Pocatalico Creek | 10.2 | 25 |
| Pocatalico River | 72.6 | 98 |
| Pond Creek | 17.3 | 17 |
| Pond Fork | 35.8 | 53 |
| Pond Fork - West Fork | 16.9 | 17 |
| Potomac River | 116 | 1,031 |
| Potomac River - North Branch | 103.4 | 219 |
| Potomac River - South Branch | 127.2 | 318 |
| Potomac River - South Branch - North Fork | 43.5 | 65 |
| Potomac River - South Branch - South Fork | 64.5 | 65 |
| Red Creek | 19.8 | 20 |
| Reedy Creek | 17.1 | 51 |
| Reedy Creek - Left Fork | 16.9 | 29 |
| Reedy Creek - Middle Fork | 12.4 | 12 |
| Reedy Creek - Right Fork | 4.1 | 4 |
| Roaring Creek | 15 | 15 |
| Saltlick Creek | 20.4 | 20 |
| Sand Fork | 20.9 | 21 |
| Sandy Creek - Left Fork (Ohio River tributary) | 16 | 16 |
| Sandy Creek (Ohio River tributary) | 12.3 | 40 |
| Sandy Creek - Right Fork (Ohio River tributary) | 11.8 | 12 |
| Sandy Creek (Tygart Valley River tributary) | 15.8 | 16 |
| Second Creek | 25.5 | 26 |
| Seneca Creek | 19.2 | 19 |
| Shavers Fork | 89.6 | 90 |
| Shenandoah River | 20.1 | 20 |
| Simpson Creek | 29 | 29 |
| Sixteenmile Creek | 17 | 17 |
| Slab Fork | 15.7 | 16 |
| Sleepy Creek | 36.1 | 63 |
| Sleepy Creek - Middle Fork | 10.7 | 11 |
| South Mill Creek | 14 | 14 |
| Spring Creek (Greenbrier River tributary) | 23.3 | 23 |
| Spring Creek (Little Kanawha River tributary) | 24.3 | 24 |
| Spruce Fork | 26.2 | 45 |
| Spruce Laurel Fork | 18.6 | 19 |
| Steer Creek | 6.3 | 57 |
| Steer Creek - Left Fork | 26.9 | 27 |
| Steer Creek - Right Fork | 23.4 | 23 |
| Stony River | 26.6 | 27 |
| Straight Fork | 0.4 | 0 |
| Strange Creek | 15.5 | 16 |
| Tear Coat Creek | 18.2 | 18 |
| Tenmile Creek | 26.8 | 40 |
| Teter Creek | 16.4 | 16 |
| Thirteenmile Creek | 30.6 | 31 |
| Three Fork Creek | 18.7 | 19 |
| Tommy Creek | 11.3 | 11 |
| Trout Run | 18.5 | 19 |
| Tug Fork | 158.5 | 281 |
| Twelvepole Creek | 32.5 | 166 |
| Twelvepole Creek - East Fork | 50.2 | 50 |
| Twelvepole Creek - West Fork | 54.9 | 55 |
| Twentymile Creek | 28.7 | 29 |
| Tygart Creek | 16.1 | 16 |
| Tygart Valley River | 135.4 | 399 |
| Walker Creek | 17.6 | 18 |
| West Fork River | 103.7 | 261 |
| Wheeling Creek | 28.1 | 51 |
| Whiteday Creek | 19.7 | 20 |
| Williams River | 33.2 | 33 |
| Winding Gulf | 15.6 | 16 |
| Worthington Creek | 17 | 17 |
| Youghiogheny River | 6.4 | 6 |
