| Agua Blanca Creek | 18.3 | 18 |
| Alameda Creek | 45.4 | 45 |
| Alamo Creek | 24.2 | 24 |
| Alamo River | 59 | 59 |
| Alder Creek | 14.6 | 15 |
| Aliso Creek | 19.9 | 20 |
| Amargosa River | 139 | 139 |
| American River | 29.9 | 463 |
| American River - Middle Fork | 62.4 | 155 |
| American River - Middle Fork - North Fork | 18.8 | 19 |
| American River - North Fork | 88.6 | 244 |
| American River - Silver Fork | 20.1 | 20 |
| American River - South Fork | 86.8 | 189 |
| Antelope Creek | 31.4 | 83 |
| Antelope Creek - North Fork | 15.8 | 16 |
| Antelope Creek - South Fork | 18.1 | 18 |
| Applegate River | 3.7 | 17 |
| Ash Creek (McCloud River tributary) | 21.1 | 21 |
| Ash Creek (Pit River tributary) | 41.9 | 78 |
| Austin Creek | 16 | 30 |
| Battle Creek | 16.6 | 97 |
| Battle Creek - North Fork | 31 | 51 |
| Battle Creek - South Fork | 29.6 | 30 |
| Bautista Creek | 19.7 | 20 |
| Bear Creek (Cache Creek tributary) | 29.6 | 30 |
| Bear Creek - North Fork (Sacramento River tributary) | 12.2 | 12 |
| Bear Creek (Sacramento River tributary) | 20.8 | 50 |
| Bear Creek (San Joaquin River - South Fork tributary) | 11.4 | 11 |
| Bear Creek (San Joaquin River tributary) | 74.3 | 115 |
| Bear Creek - South Fork (Sacramento River tributary) | 17 | 17 |
| Bear River (Eastern Pacific Ocean tributary) | 24.8 | 25 |
| Bear River (Feather River tributary) | 75 | 149 |
| Beaver Creek (Klamath River tributary) | 12.3 | 12 |
| Beaver Creek (Stanislaus River - North Fork tributary) | 20.5 | 21 |
| Beegum Creek | 17.8 | 18 |
| Big Chico Creek | 46.2 | 46 |
| Big Creek | 16.3 | 16 |
| Big Indian Creek | 17 | 17 |
| Big Kimshew Creek | 13.9 | 14 |
| Big Pine Creek | 12.3 | 12 |
| Big River | 42 | 64 |
| Big River - South Fork | 22 | 22 |
| Big Sandy Creek (Salinas River tributary) | 21.2 | 21 |
| Big Sandy Creek (San Joaquin River tributary) | 12.5 | 13 |
| Big Sulphur Creek | 22.6 | 39 |
| Big Sur River | 15.8 | 16 |
| Black Butte River | 24.4 | 24 |
| Black Rascal Creek | 13.9 | 14 |
| Blue Creek | 24.8 | 25 |
| Bluff Creek | 25.3 | 25 |
| Bodie Creek | 9.2 | 9 |
| Boulder Creek | 11.6 | 12 |
| Bridalveil Creek | 12 | 12 |
| Browns Creek | 24.5 | 25 |
| Brush Creek | 13.5 | 14 |
| Bubbs Creek | 16.4 | 16 |
| Buckeye Creek (Gualala River - South Fork tributary) | 19 | 19 |
| Buckeye Creek (Robinson Creek tributary) | 19.9 | 34 |
| Buena Vista Creek | 11.1 | 11 |
| Bull Creek | 15.1 | 15 |
| Bull Run Creek | 12.4 | 12 |
| Burch Creek | 8.4 | 22 |
| Burney Creek | 33.1 | 33 |
| Burns Creek | 27.2 | 27 |
| Butt Creek | 26.9 | 27 |
| Butte Creek | 93 | 113 |
| Cache Creek | 87.3 | 156 |
| Cache Creek - North Fork | 39.1 | 39 |
| Cahuilla Creek | 18.7 | 19 |
| Calaveras River | 52.2 | 157 |
| Calaveras River - North Fork | 26.3 | 44 |
| Calaveras River - South Fork | 8 | 60 |
| Caliente Creek | 43.8 | 108 |
| Camp Creek | 30.6 | 31 |
| Canyon Creek (North Yuba River tributary) | 22.8 | 23 |
| Canyon Creek (Trinity River tributary) | 23.2 | 23 |
| Carmel River | 39.2 | 39 |
| Carneros Creek | 11.3 | 11 |
| Carson River - East Fork | 46.7 | 62 |
| Carson River - West Fork | 26.1 | 26 |
| Cedar Creek | 14.9 | 15 |
| Chalone Creek | 19.1 | 19 |
| Chamise Creek | 13 | 13 |
| Cherry Creek | 27.7 | 77 |
| Cherry Creek - East Fork | 14.4 | 14 |
| Cherry Creek - North Fork | 16.9 | 17 |
| Cherry Creek - West Fork | 17.8 | 18 |
| Chihuahua Creek | 12.9 | 13 |
| Chiquito Creek | 22.2 | 22 |
| Cholame Creek | 37.4 | 37 |
| Chowchilla River | 54.5 | 72 |
| Chowchilla River - East Fork | 17.9 | 18 |
| Clark Fork | 18.6 | 19 |
| Clarks Creek | 13.7 | 14 |
| Clavey River | 31.3 | 43 |
| Clear Creek | 60.9 | 61 |
| Clear Creek | 25.7 | 26 |
| Clover Creek | 29.8 | 30 |
| Cold Fork | 29.9 | 30 |
| Colorado River | 235.9 | 236 |
| Convict Creek | 18.1 | 31 |
| Corbin Creek | 13.9 | 14 |
| Cosumnes River | 52.7 | 263 |
| Cosumnes River - Middle Fork | 44.7 | 70 |
| Cosumnes River - North Fork | 49.6 | 80 |
| Cosumnes River - South Fork | 25.3 | 25 |
| Cottonwood Creek | 20.2 | 20 |
| Cottonwood Creek - Middle Fork | 45.9 | 64 |
| Cottonwood Creek - North Fork | 25.3 | 25 |
| Cottonwood Creek (Sacramento River tributary) | 22.6 | 223 |
| Cottonwood Creek - South Fork | 64.2 | 94 |
| Cow Creek | 15 | 192 |
| Coyote Creek (Dry Creek (Mokelumne River tributary)) | 13.1 | 13 |
| Coyote Creek (Eastern Pacific Ocean tributary) | 34.4 | 34 |
| Cuyama River | 112.3 | 155 |
| Deadman Creek | 11.8 | 12 |
| Deep Creek | 23.4 | 42 |
| Deer Creek | 65.2 | 65 |
| Deer Creek (Cosumnes River tributary) | 43.5 | 44 |
| Deer Creek (Sacramento River tributary) | 62.8 | 63 |
| Deer Creek (Yuba River tributary) | 27.9 | 28 |
| Dibble Creek | 16.8 | 30 |
| Dibble Creek - North Fork | 12.9 | 13 |
| Digger Creek | 20.2 | 20 |
| Dillon Creek | 14.4 | 26 |
| Dillon Creek - North Fork | 11.8 | 12 |
| Dinkey Creek | 29.2 | 29 |
| Dobbyn Creek | 3.9 | 14 |
| Dry Creek (Bear River tributary) | 34.7 | 35 |
| Dry Creek (Mokelumne River tributary) | 47.1 | 93 |
| Dutch Flat Creek | 11.3 | 11 |
| East Austin Creek | 14.3 | 14 |
| East Creek | 16.2 | 16 |
| East Walker River | 22.2 | 127 |
| Eel River | 200.2 | 778 |
| Eel River - Middle Fork | 71.3 | 113 |
| Eel River - North Fork | 35.7 | 66 |
| Eel River - South Fork | 106.9 | 248 |
| Elder Creek | 29.4 | 65 |
| Elder Creek - North Fork | 17 | 17 |
| Elder Creek - South Fork | 19 | 19 |
| Elk Creek (Eastern Pacific Ocean tributary) | 13.8 | 14 |
| Elk Creek (Eel River - Middle Fork tributary) | 17.5 | 18 |
| Elk Creek (Klamath River tributary) | 22 | 22 |
| Elliott Creek | 13.2 | 13 |
| Estrella River | 27.8 | 139 |
| Fall River | 24.5 | 25 |
| Fall River | 23 | 23 |
| Falls Creek | 24.6 | 25 |
| Feather River | 72.2 | 1,241 |
| Feather River - Middle Fork | 95.5 | 193 |
| Feather River - Middle Fork - Little North Fork | 17.9 | 18 |
| Feather River - North Fork | 99.9 | 636 |
| Feather River - North Fork - East Branch | 18.2 | 210 |
| Feather River - South Fork | 44.3 | 44 |
| Feather River - West Branch | 46.7 | 61 |
| Fish Creek (Kern River - South Fork tributary) | 23.4 | 23 |
| Fish Creek (San Joaquin River - Middle Fork tributary) | 20.4 | 20 |
| French Camp Slough | 6.1 | 79 |
| Fresno River | 70.1 | 70 |
| Garcia River | 36.6 | 37 |
| Garzas Creek | 32.3 | 32 |
| Goddard Creek | 10.6 | 11 |
| Golden Trout Creek | 19 | 19 |
| Green Creek | 10.8 | 11 |
| Greenhorn Creek | 16.2 | 16 |
| Greenwood Creek | 17 | 17 |
| Grider Creek | 16.3 | 16 |
| Grindstone Creek | 34.7 | 35 |
| Griswold Creek | 13.1 | 13 |
| Gualala River | 3.5 | 110 |
| Gualala River - South Fork | 36.5 | 106 |
| Gualala River - Wheatfield Fork | 27.9 | 28 |
| Hames Creek | 14.6 | 15 |
| Hatchet Creek | 18.9 | 19 |
| Hat Creek | 48.6 | 49 |
| Hayfork Creek | 54.4 | 54 |
| Haypress Creek | 11.6 | 12 |
| Holcomb Creek | 18.9 | 19 |
| Honcut Creek | 2.9 | 72 |
| Hoods Creek | 17.2 | 17 |
| Hooker Creek | 17.3 | 17 |
| Horton Creek | 17.1 | 34 |
| Hot Creek | 19.2 | 31 |
| Huasna River | 18 | 18 |
| Hueruero Creek | 21.9 | 22 |
| Hulls Creek | 18.2 | 18 |
| Hurdygurdy Creek | 16.4 | 16 |
| Illilouette Creek | 12.2 | 12 |
| Illinois River - East Fork | 9.1 | 9 |
| Indian Creek (Caliente Creek tributary) | 16.4 | 16 |
| Indian Creek (Feather River - North Fork - East Branch tributary) | 51.5 | 151 |
| Indian Creek (Klamath River tributary) | 19.4 | 19 |
| Indian Creek (Navarro River tributary) | 14 | 14 |
| Indian Creek (Trinity River tributary) | 14.3 | 14 |
| Jackass Creek | 17 | 17 |
| Jenny Creek | 3.9 | 4 |
| Jesus Maria Creek | 18.1 | 18 |
| Jolon Creek | 11 | 11 |
| Kaiser Creek | 15.2 | 15 |
| Kaweah River | 33.7 | 132 |
| Kaweah River - East Fork | 22.5 | 23 |
| Kaweah River - Marble Fork | 15.5 | 16 |
| Kaweah River - Middle Fork | 14.8 | 15 |
| Kaweah River - North Fork | 21.4 | 21 |
| Kaweah River - South Fork | 24.3 | 24 |
| Kern River | 128.8 | 358 |
| Kern River - South Fork | 100.1 | 135 |
| Keys Creek | 13.6 | 14 |
| Kings Creek | 11.4 | 11 |
| Kings River | 98.6 | 334 |
| Kings River - Middle Fork | 35 | 46 |
| Kings River - North Fork | 40.3 | 70 |
| Kings River - South Fork | 42.2 | 87 |
| Klamath River | 211.9 | 1,350 |
| Kosk Creek | 17.3 | 17 |
| La Brea Creek | 7.3 | 24 |
| La Brea Creek - North Fork | 16.8 | 17 |
| Larabee Creek | 18.4 | 18 |
| Las Aquilas Creek | 13.5 | 14 |
| Last Chance Creek | 43.5 | 87 |
| Las Virgenes Creek | 11.6 | 12 |
| Lawrence Creek | 16.4 | 16 |
| Lewis Creek | 33.7 | 34 |
| Lily Creek | 11.6 | 12 |
| Little Antelope Creek | 17.8 | 18 |
| Little Butte Creek | 20.2 | 20 |
| Little Cow Creek | 38.4 | 53 |
| Little Creek | 13.6 | 14 |
| Little Grizzly Creek | 11.6 | 12 |
| Littlejohns Creek | 17.5 | 56 |
| Little Kern River | 24.4 | 24 |
| Little Poso Creek | 12.9 | 13 |
| Little Shasta River | 25.9 | 26 |
| Little Sulphur Creek | 16.4 | 16 |
| Little Sur River | 15.5 | 16 |
| Little Truckee River | 34.3 | 34 |
| Little Van Duzen River | 18.2 | 18 |
| Little Walker River | 15.5 | 16 |
| Llagas Creek | 31 | 31 |
| Lone Tree Creek | 16.7 | 17 |
| Long Prairie Creek | 4.1 | 4 |
| Los Angeles River | 51.6 | 52 |
| Los Banos Creek | 9.6 | 42 |
| Los Gatos Creek | 55.8 | 89 |
| Los Muertos Creek | 13.9 | 29 |
| Lost River | 18.9 | 19 |
| Lower Rock Creek | 14.3 | 45 |
| Lyle Fork | 13.8 | 14 |
| Mad River | 114 | 114 |
| Malibu Creek | 13.4 | 25 |
| Mammoth Creek | 12.1 | 12 |
| Manzana Creek | 20.1 | 20 |
| Mariposa Creek | 46.1 | 46 |
| Mark West Creek | 30 | 30 |
| Martis Creek | 13.2 | 13 |
| Mattole River | 70.6 | 83 |
| Mattole River - North Fork | 12.2 | 12 |
| McCarty Creek | 12.9 | 13 |
| McCloud River | 76.6 | 147 |
| McGee Creek (Convict Creek tributary) | 13 | 13 |
| McGee Creek (Horton Creek tributary) | 17.2 | 17 |
| Merced River | 145 | 277 |
| Merced River - North Fork | 19.2 | 19 |
| Merced River - South Fork | 45.6 | 62 |
| Middle Tuolumne River | 32.2 | 32 |
| Middle Yuba River | 55.4 | 55 |
| Mill Creek (Kings River tributary) | 32.9 | 33 |
| Mill Creek (Pit River - South Fork tributary) | 14 | 30 |
| Mill Creek (Sacramento River tributary) | 56.8 | 57 |
| Mill Creek (Thomes Creek tributary) | 16.3 | 16 |
| Mill Creek (Trinity River tributary) | 16.3 | 16 |
| Mission Creek | 21.5 | 22 |
| Moffett Creek | 24.6 | 25 |
| Mojave River | 70.7 | 113 |
| Mokelumne River | 74.2 | 552 |
| Mokelumne River - Middle Fork | 29.4 | 57 |
| Mokelumne River - North Fork | 64.5 | 65 |
| Mokelumne River - South Fork | 27.5 | 28 |
| Mono Creek | 27.9 | 28 |
| Mud Creek (McCloud River tributary) | 17.4 | 17 |
| Mud Creek (Sacramento River tributary) | 22.7 | 97 |
| Mulkey Creek | 11.9 | 12 |
| Murrieta Creek | 13.7 | 29 |
| Nacimiento River | 66.2 | 66 |
| Napa River | 57.8 | 69 |
| Navajo Creek | 16.2 | 16 |
| Navarro River | 28.6 | 105 |
| Navarro River - North Fork | 6.7 | 25 |
| Navarro River - North Fork - South Branch | 18.2 | 18 |
| New River | 65.1 | 65 |
| New River | 21.4 | 21 |
| Nordheimer Creek | 12.6 | 13 |
| North Honcut Creek | 24.6 | 69 |
| North Yuba River | 61.1 | 124 |
| Noyo River | 34.8 | 35 |
| Oak Run Creek | 26.3 | 26 |
| Oat Creek | 22.4 | 22 |
| Old Cow Creek | 36.6 | 37 |
| Onion Valley Creek | 12.5 | 13 |
| Orestimba Creek | 26.4 | 56 |
| Orestimba Creek - North Fork | 12.7 | 13 |
| Orestimba Creek - South Fork | 16.6 | 17 |
| Outlet Creek | 21.5 | 22 |
| Owens River | 198 | 364 |
| Pajaro River | 29.5 | 241 |
| Pancho Rico Creek | 28.4 | 28 |
| Panoche Creek | 45.3 | 45 |
| Parker Creek | 13.2 | 13 |
| Parks Creek | 20.7 | 21 |
| Paynes Creek | 34.3 | 34 |
| Pescadero Creek | 26.6 | 27 |
| Petes Creek | 16.1 | 16 |
| Pine Creek (Klamath River tributary) | 21.3 | 21 |
| Pine Creek (Lower Rock Creek tributary) | 14.8 | 15 |
| Pine Creek (Reeds Creek tributary) | 18.6 | 19 |
| Piru Creek | 71.4 | 90 |
| Pit River | 206.4 | 674 |
| Pit River - North Fork | 21.5 | 35 |
| Pit River - South Fork | 36 | 66 |
| Piute Creek (San Joaquin River - South Fork tributary) | 13.6 | 14 |
| Piute Creek ( Tuolumne River tributary) | 17.7 | 18 |
| Poso Creek | 88.2 | 115 |
| Quien Sabe Creek | 15 | 15 |
| Rancheria Creek (Navarro River tributary) | 37.2 | 37 |
| Rancheria Creek (Tuolumne River tributary) | 24.3 | 24 |
| Rattlesnake Creek | 14.7 | 15 |
| Reading Creek | 17.7 | 18 |
| Red Bank Creek | 42.4 | 42 |
| Red Cap Creek | 21 | 21 |
| Red Clover Creek | 30.2 | 30 |
| Redwood Creek | 65.3 | 65 |
| Reeds Creek | 21.6 | 40 |
| Return Creek | 14.9 | 15 |
| Rice Fork | 22.7 | 23 |
| Roaring River | 16.8 | 17 |
| Robinson Creek | 25.4 | 60 |
| Rock Creek (Kern River tributary) | 13.1 | 13 |
| Rock Creek (Littlejohns Creek tributary) | 21.3 | 39 |
| Rock Creek (Lower Rock Creek tributary) | 15.8 | 16 |
| Rock Creek (Mud Creek (Sacramento River tributary)) | 28.4 | 28 |
| Rockpile Creek | 22.6 | 23 |
| Rose Creek | 14.3 | 14 |
| Rough Creek | 8.3 | 18 |
| Rubicon River | 58 | 74 |
| Rubicon River - South Fork | 16.2 | 16 |
| Rush Creek (Feather River - North Fork - East Branch tributary) | 12.8 | 13 |
| Rush Creek (Trinity River tributary) | 14.5 | 15 |
| Russian River | 116.3 | 216 |
| Sacramento River | 370.3 | 4,322 |
| Salinas River | 183.4 | 659 |
| Salmon Creek (Eel River - South Fork tributary) | 13.2 | 13 |
| Salmon Creek (Kern River tributary) | 10.3 | 10 |
| Salmon River | 19.6 | 132 |
| Salmon River - North Fork | 36.9 | 37 |
| Salmon River - South Fork | 39.5 | 40 |
| Salt Creek (Eel River - North Fork tributary) | 11.6 | 12 |
| Salt Creek (Sacramento River tributary) | 17.8 | 18 |
| San Antonio Creek (Calaveras River - South Fork tributary) | 32.6 | 33 |
| San Antonio Creek (Eastern Pacific Ocean tributary) | 33.4 | 33 |
| San Antonio River | 60.6 | 72 |
| San Benito River | 110.6 | 181 |
| San Diego River | 50.5 | 73 |
| San Dieguito River | 22.3 | 75 |
| San Domingo Creek | 19.6 | 20 |
| San Felipe Creek | 48.7 | 49 |
| San Gabriel River | 60.2 | 74 |
| San Gorgonio River | 26.8 | 27 |
| San Jacinto River | 42.2 | 62 |
| San Joaquin River | 341.4 | 2,642 |
| San Joaquin River - Middle Fork | 26.6 | 47 |
| San Joaquin River - North Fork | 17.7 | 18 |
| San Joaquin River - South Fork | 51.4 | 76 |
| San Juan Creek (Eastern Pacific Ocean tributary) | 23.2 | 23 |
| San Juan Creek (Estrella River tributary) | 57.4 | 74 |
| San Lorenzo Creek | 46.1 | 80 |
| San Lorenzo River | 29.4 | 29 |
| San Luis Rey River | 70.2 | 95 |
| San Luis Rey River - West Fork | 11.5 | 12 |
| San Marcos Creek | 13.6 | 14 |
| San Mateo Creek | 26.8 | 27 |
| San Onofre Creek | 16.5 | 17 |
| Santa Ana River | 98.5 | 130 |
| Santa Clara River | 82.6 | 250 |
| Santa Margarita River | 30.8 | 140 |
| Santa Maria Creek | 17.5 | 18 |
| Santa Maria River | 24.6 | 281 |
| Santa Paula Creek | 16.5 | 17 |
| Santa Rosa Creek | 15.6 | 16 |
| Santa Ynez River | 93.3 | 121 |
| Santiago Creek | 31 | 31 |
| San Vicente Creek | 22.4 | 22 |
| San Ysabel Creek | 35.3 | 53 |
| Scott River | 57.6 | 110 |
| Scott River - East Fork | 16.6 | 17 |
| Scott River - South Fork | 11.6 | 12 |
| Sespe Creek | 61.5 | 62 |
| Shasta River | 59.6 | 106 |
| Shovel Creek | 15.2 | 15 |
| Silver Creek | 22.1 | 49 |
| Silver Creek - South Fork | 26.5 | 27 |
| Silver King Creek | 15.1 | 15 |
| Sisquoc River | 57.9 | 102 |
| Slab Creek | 12.6 | 13 |
| Slate Creek | 28.4 | 28 |
| Smith River | 26.1 | 126 |
| Smith River - Middle Fork | 27.5 | 28 |
| Smith River - North Fork | 14.6 | 15 |
| Smith River - South Fork | 41.3 | 58 |
| Sonoma Creek | 34.5 | 35 |
| Soquel Creek | 18.4 | 18 |
| Sour Grass Creek | 13.6 | 14 |
| South Cow Creek | 31 | 31 |
| South Dobbyn Creek | 10.3 | 10 |
| South Honcut Creek | 26.9 | 27 |
| South Mokelumne River | 15.4 | 568 |
| South Yuba River | 65.5 | 66 |
| Spanish Creek | 28.9 | 29 |
| Spring Creek | 12.8 | 13 |
| Squaw Valley Creek | 31.5 | 32 |
| Stanislaus River | 94.3 | 301 |
| Stanislaus River - Middle Fork | 47.6 | 66 |
| Stanislaus River - North Fork | 44.1 | 78 |
| Stanislaus River - South Fork | 48.5 | 49 |
| Stony Creek | 76.5 | 153 |
| Stony Creek - Middle Fork | 15.2 | 29 |
| Stony Creek - North Fork | 13.4 | 13 |
| Stony Creek - South Fork | 13.3 | 13 |
| Stuart Fork | 22.3 | 22 |
| Susan River | 69.7 | 120 |
| Sutter Creek | 32.9 | 33 |
| Swauger Creek | 14.3 | 14 |
| Sweetwater River | 58.8 | 59 |
| Swift Creek | 16.8 | 17 |
| Tectah Creek | 15 | 15 |
| Tehachapi Creek | 20.2 | 20 |
| Temecula Creek | 32 | 80 |
| Tenaya Creek | 13.8 | 14 |
| Ten Mile River | 7.2 | 61 |
| Ten Mile River - Middle Fork | 16.4 | 16 |
| Ten Mile River - North Fork | 16.9 | 17 |
| Ten Mile River - South Fork | 20.3 | 20 |
| Thomes Creek | 66.8 | 96 |
| Thompson Creek | 12.3 | 12 |
| Tomki Creek | 23.1 | 23 |
| Tres Pinos Creek | 27.6 | 70 |
| Trinity River | 166.1 | 507 |
| Trinity River - North Fork | 28 | 28 |
| Trinity River - South Fork | 87.4 | 142 |
| Truckee River | 37.6 | 85 |
| Tuolumne River | 152 | 464 |
| Tuolumne River - North Fork | 35.8 | 36 |
| Tuolumne River - South Fork | 29.3 | 62 |
| Van Duzen River | 75.3 | 137 |
| Virginia Creek | 16.4 | 16 |
| Walker Basin Creek | 28 | 28 |
| Walnut Creek | 13.6 | 14 |
| Warm Springs Creek | 15 | 15 |
| Warner Creek | 8.5 | 20 |
| Warthan Creek | 33.4 | 33 |
| Weber Creek | 21.2 | 21 |
| West Walker River | 53.6 | 69 |
| Whitewater River | 66 | 114 |
| Willow Creek (Ash Creek (Pit River tributary)) | 24.9 | 25 |
| Willow Creek (Klamath River tributary) | 18.1 | 18 |
| Willow Creek - North Fork (San Joaquin River tributary) | 26.6 | 27 |
| Willow Creek (San Joaquin River tributary) | 7 | 34 |
| Willow Creek (Susan River tributary) | 33.9 | 50 |
| Wilson Creek | 16.7 | 35 |
| Wolf Creek | 22.6 | 23 |
| Wooley Creek | 23 | 23 |
| Wyandotte Creek | 17.1 | 17 |
| Yager Creek | 14.8 | 43 |
| Yager Creek - North Fork | 12.2 | 12 |
| Yellow Creek | 25.3 | 25 |
| Yosemite Creek | 13.2 | 13 |
| Yuba River | 39.9 | 313 |