| Abiaca Creek | 42.2 | 42 |
| Alamuchee Creek | 14.3 | 41 |
| Amite River - East Fork | 52 | 85 |
| Amite River - West Fork | 45.9 | 46 |
| Apookta Creek | 21.4 | 21 |
| Archusa Creek | 23.6 | 24 |
| Arkabutla Creek | 29.3 | 29 |
| Ark Bayou | 22.2 | 22 |
| Atkinson Creek | 16.3 | 16 |
| Bahala Creek | 39 | 61 |
| Bakers Creek (Fourteenmile Creek tributary) | 44.1 | 72 |
| Bakers Creek (Little Bayou Pierre tributary) | 18.2 | 18 |
| Bala Chitto Creek | 27 | 27 |
| Balucta Creek | 25.9 | 26 |
| Batchelor Creek | 6 | 23 |
| Batupan Bogue | 10.5 | 38 |
| Bayou Bacon | 19.4 | 19 |
| Bayou Pierre | 103.3 | 370 |
| Bayou Sara | 14.2 | 21 |
| Bear Bayou | 5.3 | 32 |
| Bear Creek (Big Black River tributary) | 41.5 | 65 |
| Bear Creek (Fair River tributary) | 23.2 | 23 |
| Bear Creek (Tennessee River tributary) | 23.7 | 46 |
| Bear Creek (Yazoo River tributary) | 40 | 40 |
| Beaver Creek (Amite River tributary) | 31.5 | 32 |
| Beaverdam Creek | 21.2 | 21 |
| Big Black Creek | 5.6 | 376 |
| Big Black River | 285.2 | 925 |
| Big Bogue | 6.4 | 6 |
| Big Brown Creek | 23.2 | 59 |
| Big Cedar Creek | 27.5 | 45 |
| Big Creek (Bogue Chitto (West Bogue Chitto tributary)) | 22.9 | 23 |
| Big Creek (Bouie River tributary) | 15.6 | 16 |
| Big Creek (Chickasawhay River tributary) | 32.9 | 33 |
| Big Creek (Chickasawhay River tributary) | 26.9 | 67 |
| Big Creek (Cypress Creek (Noxubee River tributary)) | 22.3 | 22 |
| Big Creek (Escatawpa River tributary) | 8.6 | 9 |
| Big Creek (Leaf River tributary) | 15.9 | 43 |
| Big Creek (Pascagoula River tributary) | 20.7 | 21 |
| Big Creek (Pearl River tributary) | 15.1 | 15 |
| Big Creek (Strong River tributary) | 30.2 | 30 |
| Big Cypress Creek | 30.9 | 31 |
| Big Red Creek | 5.1 | 16 |
| Big Sand Creek (Big Black River tributary) | 15.8 | 16 |
| Big Sand Creek (Yalobusha River tributary) | 30.6 | 31 |
| Big Scooba Creek | 26.5 | 27 |
| Big Spring Creek | 20.7 | 21 |
| Big Sunflower River | 239.3 | 856 |
| Biloxi River | 58.3 | 172 |
| Black Creek (Big Black Creek tributary) | 136.3 | 213 |
| Black Creek (Escatawpa River tributary) | 15.1 | 15 |
| Black Creek (Tipton Bayou tributary) | 43.2 | 104 |
| Blackwater Creek | 31 | 31 |
| Blakely Creek | 15.7 | 16 |
| Bluff Creek (Red Creek (Big Black Creek tributary)) | 26.6 | 27 |
| Bluff Creek (West Pascagoula River tributary) | 33.3 | 33 |
| Bodka Creek | 21.9 | 48 |
| Bogue Chitto Creek (Big Black River tributary) | 38.7 | 72 |
| Bogue Chitto (Pearl River tributary) | 31.3 | 31 |
| Bogue Chitto (Tombigbee River tributary) | 17 | 17 |
| Bogue Chitto (Tuckabum Creek tributary) | 3.2 | 3 |
| Bogue Chitto (West Bogue Chitto tributary) | 69.5 | 293 |
| Boguefala Creek | 28.1 | 47 |
| Bogue Falema Creek | 15.8 | 16 |
| Boguegaba Creek | 19.2 | 19 |
| Bogue Hasty | 6.5 | 39 |
| Bogue Homo (Leaf River tributary) | 98.1 | 193 |
| Bogue Homo (Shubuta Creek tributary) | 15.1 | 15 |
| Bogue Phalia | 84.9 | 143 |
| Bouie River | 85.1 | 226 |
| Broken Pumpkin Creek | 15.7 | 16 |
| Browns Creek | 16.9 | 17 |
| Brushy Creek (Escatawpa River tributary) | 19.1 | 19 |
| Brushy Creek (Pearl River tributary) | 16.7 | 17 |
| Buckatunna Creek | 122.9 | 248 |
| Buck Creek | 17.1 | 17 |
| Buffalo River | 64.3 | 80 |
| Bull Mountain Creek | 38.8 | 63 |
| Burrell Bayou | 16.9 | 17 |
| Buttahatchee River | 45.4 | 79 |
| Buzzard Bayou | 34 | 34 |
| Calabrella Creek | 16.7 | 17 |
| Campbell Creek | 31.6 | 32 |
| Camp Creek | 16.3 | 16 |
| Camp Creek (Yonaba Creek tributary) | 16.1 | 16 |
| Caney Creek | 23.8 | 24 |
| Carters Creek | 18.1 | 18 |
| Catahoula Creek | 36.7 | 61 |
| Catalpa Creek | 24.5 | 40 |
| Cedar Creek (Bear Creek (Tennessee River tributary)) | 3.9 | 4 |
| Chambers Creek | 7.5 | 8 |
| Chewalla Creek | 16 | 16 |
| Chickasawhay Creek | 24.1 | 24 |
| Chickasawhay River | 159.8 | 977 |
| Chinchahoma Creek | 21.6 | 22 |
| Chiwapa Creek | 28.7 | 64 |
| Chunky Creek | 30 | 100 |
| Chunky River | 26.6 | 225 |
| Chuquatonchee Creek | 51.2 | 88 |
| Clarks Creek | 28.5 | 29 |
| Clear Creek (Big Black River tributary) | 16.2 | 16 |
| Clear Creek (Pearl River tributary) | 17.6 | 18 |
| Clear Creek (Pelahatchie Creek tributary) | 16.8 | 17 |
| Coffee Bogue | 38.8 | 39 |
| Coldwater River | 170.2 | 354 |
| Coles Creek | 19.7 | 107 |
| Coles Creek - North Fork | 37.5 | 38 |
| Coles Creek - South Fork | 30.5 | 31 |
| Comite Creek | 9.8 | 16 |
| Coonewah Creek | 24.9 | 25 |
| Copiah Creek | 25.7 | 26 |
| Cowpen Creek | 16 | 16 |
| Crane Creek | 23.1 | 23 |
| Cripple Deer Creek | 18.5 | 19 |
| Cuffawa Creek | 14.9 | 15 |
| Cypress Creek (Big Black River tributary) | 25.3 | 25 |
| Cypress Creek (Black Creek (Big Black Creek tributary)) | 19 | 19 |
| Cypress Creek (Noxubee River tributary) | 32.8 | 55 |
| Dabbs Creek | 40.1 | 40 |
| Darling Creek | 2.1 | 2 |
| Deer Creek | 166 | 166 |
| Doaks Creek | 35.8 | 57 |
| Donivan Creek | 17.9 | 18 |
| Dry Creek | 9.2 | 27 |
| East Bogue Chitto | 13 | 13 |
| East Bogue Hasty | 14.1 | 14 |
| East Hobolochitto Creek | 31.8 | 32 |
| East Topisaw Creek | 15.7 | 16 |
| Escatawpa River | 61.1 | 124 |
| Etehomo Creek | 26.7 | 27 |
| Eucutta Creek | 26.2 | 26 |
| Fairchilds Creek | 19 | 19 |
| Fair River | 27.5 | 64 |
| Fannegusha Creek (Black Creek (Tipton Bayou tributary)) | 39 | 39 |
| Fannegusha Creek (Pearl River tributary) | 27.5 | 28 |
| Fifteenmile Creek | 16.7 | 17 |
| Fisher Creek | 19.6 | 20 |
| Fivemile Creek | 23.2 | 23 |
| Flint Creek | 16.9 | 17 |
| Foster Creek | 21.4 | 37 |
| Fourteenmile Creek | 31.9 | 104 |
| Gaines Creek | 21 | 64 |
| Greens Creek | 7.3 | 40 |
| Greens Creek - East Fork | 15 | 15 |
| Greens Creek - West Fork | 17.3 | 17 |
| Gum Creek | 24.2 | 24 |
| Halfway Creek | 16.8 | 17 |
| Halls Creek | 20.6 | 21 |
| Hanging Moss Creek | 17.8 | 18 |
| Hang Kettle Creek | 17.2 | 17 |
| Harland Creek | 21.9 | 22 |
| Harris Bayou | 18.3 | 18 |
| Hashuqua Creek | 27.9 | 65 |
| Hatchapaloo Creek | 16.8 | 17 |
| Hatchie River | 41.8 | 110 |
| Hays Creek | 22.7 | 23 |
| Hays Creek | 3.9 | 4 |
| Hell Creek | 16 | 16 |
| Hell Hole Creek | 14.9 | 15 |
| Hickahala Creek | 27 | 45 |
| Hickory Creek | 23.8 | 24 |
| Hobolochitto Creek | 6.2 | 95 |
| Hobuck Creek | 21.3 | 21 |
| Holiday Creek | 29.6 | 30 |
| Hollis Creek | 12.6 | 60 |
| Hominy Creek | 17.6 | 18 |
| Homochitto River | 93.1 | 300 |
| Homochitto River - Middle Fork | 33.6 | 54 |
| Hontokalo Creek | 24.4 | 24 |
| Hotopha Creek | 15.3 | 15 |
| Houlka Creek | 36.8 | 37 |
| Hurricane Creek (Buckatunna Creek tributary) | 23.2 | 23 |
| Hurricane Creek (Pearl River tributary) | 18.7 | 19 |
| Hushpuckena River | 28.8 | 29 |
| Ichusa Creek | 34.3 | 46 |
| Jackson Creek (Escatawpa River tributary) | 4.7 | 5 |
| Jackson Creek (Foster Creek tributary) | 16 | 16 |
| James Creek (Bayou Pierre tributary) | 15.6 | 16 |
| James Creek (Tombigbee River tributary) | 20 | 20 |
| James Creek (Tombigbee River tributary) | 15.8 | 16 |
| Jaybird Creek | 22.8 | 23 |
| Johnson Creek | 19.6 | 20 |
| Jones Bayou | 34 | 34 |
| Jourdan River | 16.4 | 96 |
| Kincaide Creek | 6.3 | 15 |
| Kinterbish Creek | 1.1 | 1 |
| Lake Creek | 16.2 | 16 |
| Lappatubby Creek | 20 | 20 |
| Leaf River | 195.1 | 1,414 |
| Leatherwood Creek | 18.4 | 18 |
| Limekiln Creek | 17.5 | 18 |
| Limestone Creek | 27.9 | 28 |
| Line Creek | 37.9 | 102 |
| Little Bahala Creek | 21.5 | 22 |
| Little Bakers Creek | 11.6 | 12 |
| Little Bayou Pierre | 44.4 | 107 |
| Little Bayou Sara | 7.2 | 7 |
| Little Biloxi River | 38.8 | 39 |
| Little Black Creek (Black Creek (Big Black Creek tributary)) | 11.8 | 12 |
| Little Black Creek (Black Creek (Big Black Creek tributary)) | 24.3 | 24 |
| Little Bogue | 20.8 | 21 |
| Little Bogue Homo | 22.8 | 23 |
| Little Brown Creek | 20.7 | 36 |
| Little Buffalo River | 15.7 | 16 |
| Little Cedar Creek | 17.3 | 17 |
| Little Coldwater Creek | 13.2 | 13 |
| Little Comite Creek | 6.2 | 6 |
| Little Fair River | 12.8 | 13 |
| Little Hatchie River | 17.1 | 17 |
| Little Ichusa Creek | 11.9 | 12 |
| Little Noxubee River | 17.8 | 18 |
| Little Oakohay Creek | 12.9 | 13 |
| Little Red Creek (Big Red Creek tributary) | 9.9 | 10 |
| Little Red Creek (Red Creek (Big Black Creek tributary)) | 17.7 | 18 |
| Little Rock Creek | 15.2 | 15 |
| Little Sunflower River | 19.4 | 19 |
| Little Tallahalla Creek | 13.3 | 13 |
| Little Tallahatchie River | 117.7 | 359 |
| Little Tangipahoa River | 19.1 | 19 |
| Little Thompson Creek | 15.4 | 15 |
| Little White Oak Creek | 12.8 | 13 |
| Loakfoma Creek | 15.7 | 16 |
| Lobutcha Creek | 66 | 66 |
| Long Creek (Big Black River tributary) | 23.4 | 23 |
| Long Creek (Buckatunna Creek tributary) | 35 | 35 |
| Love Creek | 15.5 | 16 |
| Lower Little Creek | 20.4 | 20 |
| Luxapallila Creek | 19.8 | 41 |
| Macedonia Creek | 19.7 | 38 |
| Mackeys Creek | 27.3 | 27 |
| Magby Creek | 10.4 | 10 |
| Magees Creek | 44.6 | 45 |
| Mantachie Creek | 23 | 23 |
| Mason Creek | 25.4 | 25 |
| Mattubby Creek | 30.2 | 64 |
| McCall Creek | 18.2 | 18 |
| McGehee Creek | 16.8 | 17 |
| Mill Creek (Bogue Homo (Leaf River tributary)) | 15.8 | 16 |
| Mill Creek (Noxubee River tributary) | 17.7 | 18 |
| Mill Creek (Pascagoula River tributary) | 6.9 | 33 |
| Mississippi River | 410.3 | 5,053 |
| Morgan Fork | 20.2 | 20 |
| Mound Bayou | 18.1 | 18 |
| Mountain Creek | 16.8 | 17 |
| Mud Creek (Town Creek (Tombigbee River tributary)) | 14.2 | 30 |
| Mud Creek (Yellow Creek (Luxapallila Creek tributary)) | 0.6 | 1 |
| Muddy Creek | 12.2 | 12 |
| Murder Creek | 16.5 | 17 |
| Nanih Waiya Creek | 37.2 | 82 |
| Nash Creek | 8.4 | 8 |
| Nichols Creek | 20.3 | 20 |
| Noxapater Creek | 26.7 | 27 |
| Noxubee River | 142.5 | 602 |
| Nuakfuppa Creek | 23 | 23 |
| Oakey Woods Creek | 28.7 | 29 |
| Oaklimeter Creek | 17.6 | 18 |
| Oakohay Creek | 74.6 | 104 |
| Okahatta Creek | 21.7 | 22 |
| Okatibbee Creek | 71.5 | 116 |
| Okatoma Creek | 70.8 | 87 |
| Okatuppa Creek | 2.9 | 3 |
| Oktoc Creek | 12.5 | 28 |
| Old Little Tallahatchie River | 20.8 | 21 |
| Old River | 0.9 | 43 |
| Otoucalofa Creek | 25.8 | 26 |
| Panther Creek | 20.2 | 20 |
| Parker Bayou | 3.6 | 115 |
| Pascagoula River | 80.9 | 3,086 |
| Pawticfaw Creek | 45.6 | 77 |
| Peachahala Creek | 18.5 | 19 |
| Pearl River | 435.3 | 2,240 |
| Pegies Creek | 16 | 16 |
| Pelahatchie Creek | 50.5 | 67 |
| Pellaphalia Creek | 16.2 | 16 |
| Pelucia Creek | 31 | 31 |
| Pigeon Roost Creek | 26.7 | 42 |
| Piney Creek | 25.4 | 25 |
| Piney Woods Creek | 26.7 | 27 |
| Pinishook Creek | 24.6 | 25 |
| Plum Creek | 15.2 | 15 |
| Ponta Creek | 43.1 | 43 |
| Poplar Creek | 23.7 | 24 |
| Porter Bayou | 27.1 | 27 |
| Porter Creek | 15.9 | 16 |
| Porters Creek | 5.1 | 5 |
| Potacocowa Creek | 18 | 18 |
| Potterchitto Creek | 31.2 | 63 |
| Purvis Creek | 19.6 | 20 |
| Pushepatapa Creek - East Fork | 17.7 | 18 |
| Pushepatapa Creek - West Fork | 12 | 12 |
| Quarterliah Creek | 19.1 | 19 |
| Quiver River | 52.9 | 53 |
| Raspberry Creek | 17.2 | 17 |
| Red Creek (Big Black Creek tributary) | 96.2 | 157 |
| Red Creek (Big Red Creek tributary) | 0.9 | 1 |
| Reedy Creek | 15 | 15 |
| Reese Creek | 18.1 | 18 |
| Rhodes Creek | 20.8 | 21 |
| Richardson Creek | 16 | 16 |
| Richland Creek | 34.8 | 62 |
| Robinson Creek | 19.5 | 20 |
| Rocky Creek | 17 | 17 |
| Rocky Creek | 15.2 | 15 |
| Running Water Creek | 17.8 | 18 |
| Sabougla Creek | 24.7 | 25 |
| Sand Creek (Catalpa Creek tributary) | 15.6 | 16 |
| Sand Creek (Noxubee River tributary) | 27.3 | 27 |
| Sanders Creek | 28.8 | 29 |
| Sand Hill Creek | 16.2 | 16 |
| Sandy Creek | 25.1 | 25 |
| Saucier Creek | 18.2 | 18 |
| Second Creek | 31.5 | 32 |
| Senatobia Creek | 17.5 | 18 |
| Shockaloo Creek | 30.1 | 30 |
| Shubuta Creek | 39.8 | 55 |
| Shuqualak Creek | 16.8 | 17 |
| Shutispear Creek | 22.5 | 23 |
| Silver Creek (Big Sunflower River tributary) | 32.8 | 33 |
| Silver Creek (Bogue Chitto tributary) | 11.6 | 12 |
| Silver Creek - East Prong (Pearl River tributary) | 22.6 | 23 |
| Silver Creek - Middle Prong (Pearl River tributary) | 12.2 | 12 |
| Silver Creek (Pearl River tributary) | 20.2 | 74 |
| Silver Creek (Pearl River tributary) | 19.3 | 19 |
| Silver Creek - West Prong (Pearl River tributary) | 18.8 | 31 |
| Sipsey Creek (Buttahatchee River tributary) | 16.2 | 34 |
| Sipsey Creek (Tuscolameta Creek tributary) | 23.7 | 24 |
| Skuna River | 62.8 | 94 |
| Snake Creek (Bakers Creek (Fourteenmile Creek tributary)) | 16.1 | 16 |
| Snake Creek (Bogue Phalia tributary) | 19.3 | 19 |
| Sowashee Creek | 20.7 | 21 |
| Splunge Creek | 17.7 | 18 |
| St. Catherine Creek | 25.6 | 26 |
| Steele Bayou | 70.6 | 71 |
| Steen Creek | 29.6 | 46 |
| Straight Fence Creek | 15.3 | 15 |
| Strong River | 97.4 | 308 |
| Sucarnoochee River | 56 | 217 |
| Sun Creek (Hashuqua Creek tributary) | 19.2 | 19 |
| Sun Creek (Trim Cane Creek tributary) | 17.6 | 18 |
| Talking Warrior Creek | 25.7 | 26 |
| Tallabinnela Creek | 21.4 | 35 |
| Tallabogue Creek (Buckatunna Creek tributary) | 16.7 | 17 |
| Tallabogue (Leaf River tributary) | 21.7 | 22 |
| Tallabogue (Tuscolameta Creek tributary) | 30.2 | 30 |
| Tallahaga Creek | 28.3 | 28 |
| Tallahala Creek | 128.7 | 270 |
| Tallahalla Creek | 28.3 | 42 |
| Tallahatchie River | 84.9 | 902 |
| Tallahatta Creek | 36.1 | 36 |
| Tallahattah Creek | 20 | 20 |
| Tallahoma Creek | 81.1 | 81 |
| Tallashua Creek | 32.9 | 48 |
| Tangipahoa River | 49.2 | 112 |
| Tchoutacabouffa River | 23.4 | 57 |
| Tenmile Creek | 18.3 | 18 |
| Tennessee River | 10.8 | 91 |
| Terrible Creek | 20.1 | 20 |
| Terrys Creek | 16.3 | 16 |
| Tesheva Creek | 25 | 25 |
| Thompson Creek (Leaf River tributary) | 68.9 | 96 |
| Thompson Creek - Middle Fork (Mississippi River tributary) | 9.1 | 9 |
| Thompson Creek (Mississippi River tributary) | 12 | 30 |
| Thompson Creek - West Fork (Mississippi River tributary) | 9 | 18 |
| Tibbee Creek | 20.9 | 251 |
| Tibby Creek | 16.8 | 17 |
| Tickfaw River | 20.2 | 33 |
| Tickfaw River - West Branch | 13.2 | 13 |
| Tiger Creek | 24 | 24 |
| Tilda Bogue | 17.2 | 17 |
| Tillatoba Creek | 32 | 50 |
| Tillatoba Creek - North Fork | 17.7 | 18 |
| Tippah River | 31.2 | 65 |
| Tipton Bayou | 7 | 111 |
| Tishomingo Creek | 16.2 | 16 |
| Tombigbee River | 130.7 | 2,036 |
| Toomsuba Creek | 27 | 27 |
| Topisaw Creek | 32.7 | 90 |
| Town Creek (Nanih Waiya Creek tributary) | 16.4 | 16 |
| Town Creek (Tombigbee River tributary) | 41.8 | 185 |
| Town Creek (Tombigbee River tributary) | 20.6 | 38 |
| Trim Cane Creek | 26.6 | 44 |
| Tubbalubba Creek | 13.9 | 14 |
| Tuckabum Creek | 2 | 8 |
| Tumbaloo Creek | 17.8 | 18 |
| Turkey Creek (Bayou Pierre tributary) | 16.9 | 17 |
| Turkey Creek (Potterchitto Creek tributary) | 15.5 | 16 |
| Turkey Creek (Skuna River tributary) | 31.5 | 32 |
| Tuscolameta Creek | 33.8 | 168 |
| Tuscumbia River | 33.9 | 34 |
| Tuxachanie Creek | 33.1 | 33 |
| Twentymile Creek | 30.4 | 30 |
| Upper Little Creek | 39.8 | 40 |
| Wahalak Creek | 28.5 | 29 |
| Walesheba Creek | 24.9 | 25 |
| Weaver Creek | 28.2 | 28 |
| Wells Creek | 28.8 | 29 |
| Wesson Branch | 15.4 | 15 |
| West Bogue Chitto | 18.3 | 18 |
| West Bogue Hasty | 18.5 | 19 |
| West Bowie Creek | 18.2 | 18 |
| West Hobolochitto Creek | 57.2 | 57 |
| West Little Thompson Creek | 11.5 | 12 |
| West Pascagoula River | 16.7 | 50 |
| West Tallahala Creek | 54.4 | 74 |
| West Topisaw Creek | 23.8 | 24 |
| Whiskey Creek | 26.2 | 26 |
| White Creek | 16 | 16 |
| White Oak Creek | 35.2 | 90 |
| White Sand Creek | 37.2 | 60 |
| Willis Creek | 16.3 | 16 |
| Wolf Creek (Big Black River tributary) | 17.1 | 17 |
| Wolf Creek (Hashuqua Creek tributary) | 18 | 18 |
| Wolf Creek (Mattubby Creek tributary) | 17.4 | 17 |
| Wolf Creek (Wolf River (Gulf of Mexico tributary)) | 19.6 | 20 |
| Wolf River (Gulf of Mexico tributary) | 74.1 | 133 |
| Wolf River (Mississippi River tributary) | 27.7 | 28 |
| Woodward Creek | 17.5 | 18 |
| Yalobusha River | 117.8 | 346 |
| Yantley Creek | 3 | 3 |
| Yazoo River | 172 | 2,555 |
| Yellow Creek (Chickasawhay River tributary) | 22.8 | 23 |
| Yellow Creek (Luxapallila Creek tributary) | 9.9 | 11 |
| Yellow Creek (Noxubee River tributary) | 24.2 | 24 |
| Yellow Creek (Tennessee River tributary) | 26.7 | 27 |
| Yockanookany River | 78.1 | 95 |
| Yocona River | 78.5 | 104 |
| Yonaba Creek | 7.9 | 24 |
| Zilpha Creek | 26.8 | 27 |
