| Alder Brook | 11.6 | 12 |
| Allen Brook | 12.6 | 13 |
| Ayers Brook | 13.2 | 13 |
| Ball Mountain Brook | 13.9 | 14 |
| Barton River | 30.4 | 42 |
| Batten Kill | 27.3 | 44 |
| Black Creek | 29.6 | 41 |
| Black River | 49.4 | 49 |
| Black River (Connecticut River tributary) | 41.6 | 53 |
| Black River - North Branch (Connecticut River tributary) | 11.2 | 11 |
| Browns River | 30.1 | 30 |
| Calendar Brook | 11.3 | 11 |
| Castleton River | 29.4 | 29 |
| Clarendon River | 12.3 | 12 |
| Clyde River | 28.4 | 40 |
| Cold River | 12.8 | 13 |
| Connecticut River | 235.8 | 1,293 |
| Cookville Brook | 11.5 | 12 |
| Cutler Mill Brook | 15.5 | 16 |
| Dead Creek (Black Creek tributary) | 11.8 | 12 |
| Dead Creek - East Branch (Otter Creek tributary) | 16 | 34 |
| Dead Creek (Otter Creek tributary) | 8 | 42 |
| Dead Creek - West Branch (Otter Creek tributary) | 17.6 | 18 |
| Deerfield River | 32.3 | 100 |
| Deerfield River - East Branch | 16.8 | 17 |
| Deerfield River - North Branch | 13.9 | 14 |
| Deerfield River - West Branch | 11.8 | 12 |
| Dog River | 23.9 | 24 |
| East Creek | 20.8 | 21 |
| East Putney Brook | 11.9 | 12 |
| Fall River | 3.8 | 4 |
| Furnace Brook | 11.4 | 11 |
| Gihon River | 19.7 | 20 |
| Green River (Batten Kill tributary) | 10.4 | 10 |
| Green River (Deerfield River tributary) | 15.1 | 15 |
| Green River (Lamoille River tributary) | 11.8 | 12 |
| Halls Stream | 0.8 | 1 |
| Hoosic River | 8.4 | 36 |
| Hubbardton River | 26.6 | 27 |
| Hungerford Brook | 11.7 | 12 |
| Huntington River | 21.3 | 21 |
| Indian Brook | 17 | 17 |
| Indian River (Mettawee River tributary) | 7.6 | 8 |
| Jail Branch | 14.7 | 15 |
| Joes Brook | 19.9 | 20 |
| Kingsbury Branch | 7.1 | 34 |
| Kingsbury Brook | 14.2 | 14 |
| Lamoille River | 87.7 | 197 |
| Lamoille River - North Branch | 17.8 | 18 |
| La Platte River | 19.4 | 19 |
| Leach Creek | 7.9 | 8 |
| Lemon Fair River | 33.9 | 34 |
| Lewis Creek | 32.6 | 46 |
| Little Otter Creek | 23.6 | 36 |
| Little River | 15.7 | 27 |
| Little River - West Branch | 11.2 | 11 |
| Little White Creek | 5.9 | 6 |
| Locust Creek | 12.5 | 13 |
| Lulls Brook | 12.1 | 12 |
| Mad River | 27.8 | 28 |
| Malletts Creek | 13.7 | 14 |
| Mettawee River | 24.4 | 32 |
| Middlebury River | 10.3 | 10 |
| Mill Brook (Connecticut River tributary) | 20.7 | 21 |
| Mill Brook (Lamoille River tributary) | 12.6 | 13 |
| Mill Brook (Winooski River tributary) | 11.6 | 12 |
| Miller Run | 14.8 | 15 |
| Mill River (Lake Champlain tributary) | 13 | 13 |
| Mill River (Otter Creek tributary) | 17.6 | 18 |
| Missisquoi River | 77.6 | 163 |
| Moose River | 31.6 | 32 |
| Mud Creek | 12.1 | 12 |
| Neshobe River | 12.7 | 13 |
| New Haven River | 25.7 | 26 |
| North River - East Branch | 10.4 | 10 |
| Nulhegan River | 22.5 | 84 |
| Nulhegan River - Black Branch | 16.4 | 16 |
| Nulhegan River - East Branch | 18.1 | 18 |
| Nulhegan River - North Branch | 15.8 | 16 |
| Nulhegan River - Yellow Branch | 11.5 | 12 |
| Ompompanoosuc River | 24.8 | 43 |
| Ompompanoosuc River - West Branch | 18.3 | 18 |
| Ottauquechee River | 42.2 | 42 |
| Otter Creek | 113.7 | 301 |
| Passumpsic River | 23 | 191 |
| Passumpsic River - East Branch | 20.4 | 20 |
| Passumpsic River - West Branch | 16.2 | 28 |
| Paul Stream | 17.6 | 18 |
| Pekin Brook | 12.8 | 27 |
| Pherrins River | 12 | 12 |
| Pond Brook | 13.4 | 13 |
| Poultney River | 78.3 | 166 |
| Rock River | 13.7 | 14 |
| Saxtons River | 23.1 | 23 |
| South Wheelock Branch | 12 | 12 |
| Stevens Branch | 17.8 | 33 |
| The Branch | 12.2 | 12 |
| Trout River | 11 | 11 |
| Tyler Branch | 9.3 | 22 |
| Utley Brook | 12.5 | 13 |
| Waits River | 25.5 | 43 |
| Waits River - South Branch | 5.5 | 17 |
| Walloomsac River | 9.9 | 27 |
| Wardsboro Brook | 13.4 | 13 |
| Washburn Brook | 5.3 | 21 |
| Wells River | 20.1 | 20 |
| West River | 54.5 | 126 |
| Whetstone Brook | 11.6 | 12 |
| White Creek | 6.6 | 7 |
| White River | 60.9 | 170 |
| White River - First Branch | 25.6 | 26 |
| White River - Second Branch | 27.9 | 28 |
| White River - Third Branch | 30.3 | 44 |
| Wild Branch | 17 | 17 |
| Williams River | 27.5 | 53 |
| Williams River - Middle Branch | 14.2 | 26 |
| Williams River - South Branch | 11.6 | 12 |
| Willoughby River | 11.8 | 12 |
| Winhall River | 18.3 | 18 |
| Winooski River | 94.5 | 319 |
| Winooski River - North Branch | 22.3 | 22 |
