| Aikman Creek | 20.1 | 20 |
| Anderson River | 51.8 | 82 |
| Anderson River - Middle Fork | 30.6 | 31 |
| Back Creek | 17.1 | 17 |
| Baugo Creek | 25.4 | 25 |
| Beanblossom Creek | 51.7 | 52 |
| Bear Creek | 18.5 | 19 |
| Beaver Creek (Iroquois River tributary) | 10.9 | 11 |
| Beaver Creek (White River - East Fork tributary) | 26 | 26 |
| Beech Creek | 15.1 | 15 |
| Bell Creek | 16.3 | 16 |
| Big Blue River | 84.7 | 212 |
| Big Creek (Muscatatuck River tributary) | 45.1 | 45 |
| Big Creek (Pigeon Creek (Ohio River tributary)) | 15.5 | 16 |
| Big Creek (Tippecanoe River tributary) | 22.9 | 23 |
| Big Creek (Wabash River tributary) | 31.7 | 48 |
| Big Lick Creek | 20.5 | 21 |
| Big Pine Creek | 50.9 | 77 |
| Big Raccoon Creek | 87.9 | 175 |
| Big Shawnee Creek | 20.5 | 33 |
| Big Walnut Creek | 64.8 | 78 |
| Birch Creek | 16.7 | 17 |
| Black Creek (Salamonie River tributary) | 15 | 15 |
| Black Creek (White River tributary) | 26 | 26 |
| Black River | 19.8 | 20 |
| Blue Creek | 26.1 | 26 |
| Blue River (Eel River tributary) | 22.5 | 23 |
| Blue River - Middle Fork (Ohio River tributary) | 18.5 | 19 |
| Blue River (Ohio River tributary) | 76.8 | 142 |
| Blue River - South Fork (Ohio River tributary) | 31.1 | 31 |
| Blue River - West Fork (Ohio River tributary) | 15.6 | 16 |
| Boggs Creek | 21.6 | 22 |
| Bogus Run | 15.4 | 15 |
| Brandywine Creek | 42.6 | 43 |
| Brooks Creek | 17.2 | 17 |
| Brouilletts Creek | 15.1 | 15 |
| Browns Wonder Creek | 15.1 | 15 |
| Buck Creek (Big Blue River tributary) | 15 | 15 |
| Buck Creek (Ohio River tributary) | 29.7 | 42 |
| Buck Creek - South Fork (Ohio River tributary) | 12.1 | 12 |
| Buck Creek (Sugar Creek (Driftwood River tributary)) | 27.7 | 28 |
| Buck Creek (White River tributary) | 23.5 | 40 |
| Burnett Creek | 22.1 | 22 |
| Busseron Creek | 38.6 | 51 |
| Busseron Creek - West Fork | 12.3 | 12 |
| Campbells Run | 16.7 | 17 |
| Carpenter Creek | 25.9 | 26 |
| Cedar Creek | 32 | 53 |
| Chippewanuck Creek | 15.6 | 16 |
| Christiana Creek | 7.7 | 8 |
| Cicero Creek | 42.6 | 63 |
| Clear Creek (Salt Creek (White River - East Fork tributary)) | 19.4 | 19 |
| Clear Creek (Wabash River tributary) | 18.2 | 18 |
| Clear Creek (Wabash River tributary) | 6.5 | 7 |
| Clifty Creek | 41.7 | 104 |
| Clifty Creek - Middle Branch | 11.2 | 11 |
| Clifty Creek - North Branch | 14.1 | 14 |
| Coal Creek | 33.7 | 109 |
| Coal Creek - East Fork | 21.4 | 21 |
| Coal Creek - North Fork | 21.7 | 22 |
| Cobbs Fork | 16.2 | 16 |
| Coles Creek | 16.2 | 16 |
| Conns Creek | 19.3 | 19 |
| Cool Creek | 16.2 | 16 |
| Coon Creek (Sugar Creek (Iroquois River tributary)) | 0.9 | 1 |
| Cornstalk Creek | 16 | 16 |
| Crooked Creek (Ohio River tributary) | 23.2 | 23 |
| Crooked Creek (Wabash River tributary) | 24.9 | 25 |
| Croys Creek | 17.4 | 17 |
| Cypress Creek | 19.4 | 19 |
| Deep River | 28.2 | 28 |
| Deer Creek (Mill Creek (Eel River tributary)) | 28.9 | 29 |
| Deer Creek (Mississinewa River tributary) | 16.5 | 17 |
| Deer Creek - South Fork (Wabash River tributary) | 17.5 | 18 |
| Deer Creek (Wabash River tributary) | 55.7 | 87 |
| Driftwood River | 15.8 | 362 |
| Duck Creek | 18.7 | 19 |
| Eagle Creek | 39.1 | 83 |
| Eel River | 54.9 | 272 |
| Eel River | 94.5 | 169 |
| Eightmile Creek | 27.2 | 27 |
| Elkhart River | 48.3 | 131 |
| Elkhart River - North Branch | 18.6 | 19 |
| Elkhart River - South Branch | 19.3 | 19 |
| Fall Creek | 58.3 | 107 |
| Fall Fork | 17.9 | 18 |
| Fawn River | 28.8 | 29 |
| First Creek | 26.3 | 26 |
| Fishback Creek | 18.3 | 18 |
| Fish Creek | 26.6 | 27 |
| Flat Creek | 20.5 | 21 |
| Flatrock Creek | 13.2 | 13 |
| Flatrock River | 99.6 | 527 |
| Fly Creek | 15.9 | 16 |
| Fourteenmile Creek | 23.4 | 23 |
| Graham Creek | 53.6 | 72 |
| Grand Calumet River - East Branch | 10 | 10 |
| Grand Calumet River - West Branch (easterly flow) | 3.1 | 3 |
| Grand Calumet River - West Branch (westerly flow) | 0.2 | 0 |
| Great Miami River | 2.1 | 404 |
| Greens Fork | 32.9 | 33 |
| Greenville Creek | 8.7 | 9 |
| Guthrie Creek | 31 | 48 |
| Haw Creek | 21.7 | 22 |
| Hogan Creek | 0.6 | 53 |
| Honey Creek (Tippecanoe River tributary) | 16.6 | 17 |
| Honey Creek (Wabash River tributary) | 26.6 | 27 |
| Hunley Creek | 15.1 | 15 |
| Indiana Harbor and Ship Canal | 4.1 | 17 |
| Indian Creek (Great Miami River tributary) | 13.8 | 14 |
| Indian Creek (Ohio River tributary) | 69.2 | 96 |
| Indian Creek (Ohio River tributary) | 18.8 | 19 |
| Indian Creek (Sugar Creek (Wabash River tributary)) | 15.4 | 15 |
| Indian Creek (Tippecanoe River tributary) | 19.4 | 19 |
| Indian Creek (Wabash River tributary) | 15.7 | 16 |
| Indian Creek (White River - East Fork tributary) | 59.6 | 77 |
| Indian Creek (White River tributary) | 31.6 | 32 |
| Indian Kentuck Creek | 29.3 | 46 |
| Indian Kentucky Creek - West Fork | 16.3 | 16 |
| Iroquois River | 48.1 | 119 |
| Jordan Creek (Eel River tributary) | 15.6 | 16 |
| Jordan Creek (Vermilion River - North Fork - Middle Branch (Wabash River tributary)) | 11.4 | 11 |
| Kankakee River | 74.9 | 293 |
| Killbuck Creek | 28.5 | 29 |
| Kilmore Creek | 26.5 | 27 |
| Kokomo Creek | 16.5 | 17 |
| Lambs Creek | 16.8 | 17 |
| Lattas Creek | 17.7 | 18 |
| Laughery Creek | 82.8 | 113 |
| Laughery Creek - South Fork | 11.7 | 12 |
| Leatherwood Creek (Big Raccoon Creek tributary) | 18 | 18 |
| Leatherwood Creek (White River - East Fork tributary) | 19.8 | 20 |
| Lewis Creek | 21.2 | 21 |
| Lick Creek (Fall Creek tributary) | 25.9 | 26 |
| Lick Creek (Lost River tributary) | 24.1 | 24 |
| Lick Creek (White River tributary) | 16.9 | 17 |
| Limberlost Creek | 17.5 | 18 |
| Little Blue River (Big Blue River tributary) | 48.2 | 48 |
| Little Blue River (Ohio River tributary) | 36.7 | 37 |
| Little Buck Creek | 15.7 | 16 |
| Little Calumet River - East Arm | 23.2 | 44 |
| Little Calumet River (easterly flow) | 19.7 | 92 |
| Little Calumet River (westerly flow) | 3.4 | 4 |
| Little Cedar Creek | 20.6 | 21 |
| Little Cicero Creek | 19.9 | 20 |
| Little Creek | 15.9 | 16 |
| Little Deer Creek | 13.8 | 14 |
| Little Eagle Creek | 11.6 | 12 |
| Little Eagle Creek | 14.3 | 14 |
| Little Elkhart River | 22.8 | 23 |
| Little Flatrock River | 24.2 | 24 |
| Little Four Mile Creek | 12.4 | 12 |
| Little Graham Creek | 18.6 | 19 |
| Little Indian Creek | 15.2 | 15 |
| Little Indian Creek | 11.5 | 12 |
| Little Kankakee River | 20.9 | 21 |
| Little Oil Creek | 11.3 | 11 |
| Little Pigeon Creek | 42.7 | 59 |
| Little Pine Creek | 18.6 | 19 |
| Little Pipe Creek | 13.3 | 13 |
| Little Potato Creek | 20.7 | 21 |
| Little Raccoon Creek | 36.4 | 53 |
| Little Raccoon Creek - South Fork | 16.5 | 17 |
| Little River | 22.8 | 50 |
| Little Salamonie River | 12.4 | 12 |
| Little Salt Creek (Salt Creek (White River - East Fork tributary)) | 15.4 | 15 |
| Little Salt Creek (Salt Creek (Whitewater River tributary)) | 14.4 | 14 |
| Little Sand Creek | 16.2 | 16 |
| Little Shawnee Creek | 12 | 12 |
| Little Sugar Creek | 22.3 | 22 |
| Little Vermilion River (Wabash River tributary) | 20.8 | 21 |
| Little Walnut Creek | 13.1 | 13 |
| Little Wea Creek | 14.8 | 15 |
| Loblolly Creek | 7.5 | 25 |
| Loon Creek | 15.4 | 15 |
| Lost River | 88.4 | 113 |
| Lye Creek | 7.4 | 28 |
| Maria Creek | 23 | 23 |
| Martindale Creek | 28.6 | 29 |
| Maumee River | 28.1 | 230 |
| Mill Creek - East Fork (Eel River tributary) | 12.6 | 13 |
| Mill Creek (Eel River tributary) | 47.8 | 89 |
| Mill Creek (Tippecanoe River tributary) | 24.8 | 25 |
| Mill Creek (Wabash River tributary) | 20.2 | 20 |
| Mississinewa River | 108.7 | 164 |
| Mud Creek (Fall Creek tributary) | 22.3 | 22 |
| Mud Creek (Tippecanoe River tributary) | 16.8 | 17 |
| Mud Creek (Wildcat Creek tributary) | 16 | 33 |
| Muddy Fork | 23 | 23 |
| Mud Pine Creek | 25.6 | 26 |
| Muscatatuck River | 54.2 | 326 |
| Muscatatuck River - Vernon Fork | 89.4 | 139 |
| Nettle Creek | 0.8 | 1 |
| Nolands Fork | 35.6 | 36 |
| North Hogan Creek | 24.2 | 24 |
| Ohio River | 352.8 | 8,443 |
| Oil Creek | 19.9 | 31 |
| Otter Creek (Muscatatuck River - Vernon Fork tributary) | 32.2 | 32 |
| Otter Creek - North Branch (Wabash River tributary) | 20.7 | 21 |
| Otter Creek (Wabash River tributary) | 29.9 | 51 |
| Patoka River | 167.1 | 220 |
| Patoka River - South Fork | 16.9 | 17 |
| Paw Paw Creek | 20.8 | 21 |
| Pigeon Creek (Ohio River tributary) | 47.9 | 63 |
| Pigeon Creek (Pigeon River (St. Joseph River (Lake Michigan tributary))) | 37.8 | 38 |
| Pigeon River (St. Joseph River (Lake Michigan tributary)) | 25.4 | 95 |
| Pipe Creek (Wabash River tributary) | 49.1 | 62 |
| Pipe Creek (White River tributary) | 34.1 | 34 |
| Pipe Creek (Whitewater River tributary) | 20.6 | 21 |
| Pleasant Run Creek | 16.7 | 17 |
| Plummer Creek | 18 | 72 |
| Pond Creek | 17.5 | 18 |
| Prairie Creek (Coal Creek tributary) | 17.2 | 17 |
| Prairie Creek - North Fork (White River tributary) | 18.7 | 19 |
| Prairie Creek (Salamonie River tributary) | 15.9 | 16 |
| Prairie Creek - South Fork (White River tributary) | 12.9 | 13 |
| Prairie Creek (Sugar Creek (Wabash River tributary)) | 24.9 | 25 |
| Prairie Creek (Wabash River tributary) | 19 | 19 |
| Prairie Creek (White River tributary) | 8.3 | 40 |
| Raccoon Creek | 18.9 | 19 |
| Redwood Creek | 18.7 | 19 |
| Richland Creek | 38.8 | 54 |
| Ripley Creek | 18.7 | 19 |
| Rock Creek (Wabash River tributary) | 30 | 30 |
| Rock Creek (Wabash River tributary) | 25.9 | 26 |
| Salamonie River | 83.9 | 144 |
| Salt Creek (Little Calumet River - East Arm tributary) | 21.2 | 21 |
| Salt Creek - Middle Fork (White River - East Fork tributary) | 22.3 | 44 |
| Salt Creek - North Fork (White River - East Fork tributary) | 49.2 | 49 |
| Salt Creek - South Fork (White River - East Fork tributary) | 21.6 | 22 |
| Salt Creek (White River - East Fork tributary) | 47.7 | 176 |
| Salt Creek (Whitewater River tributary) | 27.8 | 42 |
| Sand Creek | 61.3 | 134 |
| Sand Creek - Muddy Fork | 18.2 | 18 |
| Silver Creek (Eel River tributary) | 16.3 | 16 |
| Silver Creek (Ohio River tributary) | 38.7 | 62 |
| Silver Creek (Whitewater River - East Fork tributary) | 17.2 | 17 |
| Sixmile Creek (Big Blue River tributary) | 21.2 | 21 |
| Sixmile Creek (Muscatatuck River - Vernon Fork tributary) | 17.5 | 18 |
| Sixmile Creek (Wabash River tributary) | 15.6 | 16 |
| Slough Creek | 15.9 | 42 |
| Smothers Creek | 18 | 18 |
| Solomon Creek | 16.3 | 16 |
| South Hogan Creek | 28.3 | 28 |
| St. Joseph River (Lake Michigan tributary) | 41.8 | 352 |
| St. Joseph River (Maumee River tributary) | 41.7 | 122 |
| St. Marys River | 40.5 | 67 |
| Stoney Creek | 4.2 | 4 |
| Stony Creek | 20 | 20 |
| Stotts Creek | 3.5 | 32 |
| Stotts Creek - North Prong | 11.1 | 11 |
| Stotts Creek - South Prong | 16.9 | 17 |
| Stucker Fork | 15.6 | 16 |
| Sugar Creek (Driftwood River tributary) | 83.7 | 135 |
| Sugar Creek (Iroquois River tributary) | 17.2 | 18 |
| Sugar Creek (Wabash River tributary) | 15.5 | 16 |
| Sugar Creek (Wabash River tributary) | 8.6 | 9 |
| Sugar Creek (Wabash River tributary) | 95.2 | 270 |
| Sugar Creek - Walnut Fork (Wabash River tributary) | 28.1 | 50 |
| Sugar Mill Creek | 24.4 | 24 |
| Sulphur Creek | 17.4 | 17 |
| Symons Creek | 17.9 | 18 |
| Tanners Creek | 12.4 | 42 |
| Tanners Creek - East Fork | 16.9 | 17 |
| Tanners Creek - West Fork | 12.6 | 13 |
| Tippecanoe River | 180.7 | 331 |
| Trimble Creek | 18.1 | 18 |
| Turkey Creek (Elkhart River tributary) | 28.1 | 28 |
| Turkey Creek (Mud Creek (Wildcat Creek tributary)) | 17.4 | 17 |
| Turkey Creek (Pigeon River (St. Joseph River (Lake Michigan tributary))) | 15.8 | 16 |
| Turkey Run | 14.5 | 15 |
| Turman Creek | 33 | 33 |
| Veale Creek | 18.6 | 19 |
| Vermilion River - North Fork - Middle Branch (Wabash River tributary) | 1.7 | 13 |
| Vermilion River - North Fork (Wabash River tributary) | 4 | 17 |
| Vermilion River (Wabash River tributary) | 10.6 | 32 |
| Wabash River | 459.3 | 6,733 |
| Walnut Creek | 17.8 | 18 |
| Wea Creek | 21.1 | 36 |
| Weesau Creek | 15 | 15 |
| White Creek | 28.1 | 49 |
| White Creek - East Fork | 20.7 | 21 |
| White Lick Creek | 50.3 | 115 |
| White Lick Creek - East Fork | 23.6 | 24 |
| White Lick Creek - West Fork | 29.6 | 30 |
| White Lick Creek - West Fork | 11.9 | 12 |
| White River | 370.4 | 3,455 |
| White River - East Fork | 192.6 | 1,871 |
| Whitewater River | 93.4 | 367 |
| Whitewater River - Dry Fork | 7.4 | 7 |
| Whitewater River - East Fork | 41.4 | 71 |
| Whitewater River - East Fork - Middle Fork | 12.1 | 12 |
| Wildcat Creek | 93.5 | 275 |
| Wildcat Creek - Middle Fork | 35.7 | 52 |
| Wildcat Creek - South Fork | 52.7 | 132 |
| Williams Creek | 18.1 | 18 |
| Wolf Creek | 16.1 | 16 |
| Wyaloosing Creek | 19.8 | 38 |
| Yellow Creek | 16.2 | 16 |
| Yellow River | 63.1 | 79 |
| Youngs Creek | 23.5 | 24 |
