| Al Hopkins Creek | 14.2 | 14 |
| Antelope Creek (Hat Creek tributary) | 17 | 53 |
| Antelope Creek (Missouri River tributary) | 16.6 | 17 |
| Antelope Creek (Niobrara River tributary) | 44 | 44 |
| Aowa Creek | 31.6 | 74 |
| Arikaree River | 5.7 | 6 |
| Arkeketa Creek | 14.5 | 15 |
| Ash Creek (Little Blue River tributary) | 17.9 | 18 |
| Ash Creek (Niobrara River tributary) | 16 | 16 |
| Ash Creek (Republican River tributary) | 13.9 | 14 |
| Ash Creek (South Loup River tributary) | 28.2 | 28 |
| Ash Creek (White River tributary) | 5.4 | 36 |
| Baker Creek | 19 | 19 |
| Balls Branch | 15.2 | 15 |
| Barngrover Creek | 24.7 | 25 |
| Battle Creek | 33.2 | 33 |
| Bazile Creek | 70.3 | 121 |
| Bean Creek | 14.1 | 14 |
| Bear Creek (Beaver Creek (Big Blue River - West Fork tributary)) | 16.1 | 16 |
| Bear Creek (Big Blue River tributary) | 28.7 | 45 |
| Bear Creek (Niobrara River tributary) | 42.4 | 42 |
| Beaver Creek (Big Blue River - West Fork tributary) | 118.7 | 135 |
| Beaver Creek (Loup River tributary) | 130.8 | 196 |
| Beaver Creek (Missouri River tributary) | 30.7 | 31 |
| Beaver Creek (Niobrara River tributary) | 21.9 | 22 |
| Beaver Creek (Republican River tributary) | 31.9 | 32 |
| Beaver Creek (Sappa Creek tributary) | 104.4 | 104 |
| Beaver Creek (South Loup River tributary) | 15.5 | 16 |
| Beaver Creek (White River tributary) | 34 | 34 |
| Bell Creek | 43.9 | 44 |
| Big Blue River | 267.5 | 2,854 |
| Big Blue River - North Branch | 34.7 | 50 |
| Big Blue River - West Fork | 182.4 | 546 |
| Big Blue River - West Fork - North Branch | 45.8 | 46 |
| Big Bordeaux Creek | 25.9 | 26 |
| Big Cedar Creek | 32.9 | 33 |
| Big Cottonwood Creek | 45.1 | 61 |
| Big Creek | 28.3 | 28 |
| Big Indian Creek | 48.3 | 68 |
| Big Nemaha River | 20 | 473 |
| Big Nemaha River - Middle Branch | 32.3 | 47 |
| Big Nemaha River - North Fork | 77.7 | 205 |
| Big Nemaha River - South Fork | 30.2 | 153 |
| Big Papillion Creek | 39.3 | 58 |
| Big Sandy Creek (Little Blue River tributary) | 107.9 | 254 |
| Big Sandy Creek (Niobrara River tributary) | 33.3 | 33 |
| Big Sandy Creek - South Fork (Little Blue River tributary) | 53.2 | 53 |
| Big Timber Creek (Republican River - South Fork tributary) | 1.7 | 2 |
| Bills Creek | 16 | 16 |
| Birdwood Creek | 17.2 | 66 |
| Birdwood Creek - North Fork | 24.1 | 24 |
| Blackbird Creek | 4 | 48 |
| Blackbird Creek | 23.1 | 23 |
| Blacksnake Creek | 23.4 | 23 |
| Blackwood Creek | 62 | 89 |
| Blakely Creek | 17 | 17 |
| Bloody Creek | 18.4 | 18 |
| Bloody Run | 14.1 | 14 |
| Bloody Run Creek | 15.4 | 15 |
| Blue Creek | 57.9 | 58 |
| Boardman Creek | 46.5 | 47 |
| Bobtail Creek | 13.9 | 14 |
| Bogus Creek | 16.4 | 16 |
| Bohemian Creek | 17.6 | 33 |
| Bone Creek (Long Pine Creek tributary) | 38 | 61 |
| Bone Creek (Platte River tributary) | 22.9 | 23 |
| Bordeaux Creek | 12.9 | 64 |
| Bow Creek | 47.5 | 164 |
| Box Butte Creek | 52.5 | 53 |
| Breslau Creek | 12.5 | 32 |
| Brush Creek (Indian Creek (Hat Creek tributary)) | 2.7 | 3 |
| Brush Creek (Niobrara River tributary) | 23.4 | 23 |
| Brushy Creek | 6.9 | 33 |
| Buckley Creek | 15 | 15 |
| Buffalo Creek (Elkhorn River tributary) | 19.3 | 19 |
| Buffalo Creek (Elm Creek (Platte River tributary)) | 85.8 | 125 |
| Buffalo Creek (Keya Paha River tributary) | 4.8 | 5 |
| Buffalo Creek (Little Blue River tributary) | 15.3 | 15 |
| Buffalo Creek (Platte River tributary) | 30.3 | 30 |
| Bull Creek (Lone Tree Creek tributary) | 15.3 | 15 |
| Bull Creek (Minnechaduza Creek tributary) | 2.7 | 3 |
| Burntwood Creek | 16.3 | 16 |
| Burton Creek | 29.5 | 30 |
| Butterfly Creek | 14.2 | 14 |
| Cache Creek | 36.3 | 36 |
| Calamus River | 116.4 | 175 |
| Calf Creek | 79.1 | 79 |
| Callahan Creek | 17.5 | 18 |
| Camp Creek | 15.5 | 16 |
| Cat Creek | 15.6 | 16 |
| Cedar Creek (Big Blue River tributary) | 21.3 | 21 |
| Cedar Creek (Cedar River tributary) | 37.6 | 91 |
| Cedar Creek (Elkhorn River tributary) | 33 | 56 |
| Cedar Creek (Medicine Creek tributary) | 26 | 26 |
| Cedar Creek (North Loup River tributary) | 19.1 | 19 |
| Cedar Creek (North Platte River tributary) | 15.2 | 15 |
| Cedar Creek (Platte River tributary) | 14 | 14 |
| Cedar Creek (South Loup River tributary) | 14.5 | 15 |
| Cedar River | 90.9 | 319 |
| Center Creek | 37.7 | 38 |
| Chadron Creek | 25 | 25 |
| Clark Creek | 13.7 | 14 |
| Clatonia Creek | 18 | 18 |
| Clear Creek (Mud Creek tributary) | 85.6 | 86 |
| Clear Creek (Platte River tributary) | 49 | 49 |
| Clear Creek (Wahoo Creek tributary) | 20 | 20 |
| Clearwater Creek | 40.1 | 40 |
| Clifford Creek | 23.4 | 23 |
| Cob Creek | 17.2 | 17 |
| Cole Creek | 14.4 | 14 |
| Coon Branch | 19.1 | 19 |
| Coon Creek (Logan Creek Dredge tributary) | 18.4 | 18 |
| Coon Creek (Republican River tributary) | 35.2 | 35 |
| Cottonwood Creek (Keya Paha River tributary) | 11.2 | 11 |
| Cottonwood Creek (Little Blue River tributary) | 44.4 | 44 |
| Cottonwood Creek (Loup River tributary) | 18.1 | 18 |
| Cottonwood Creek (Middle Loup River tributary) | 14.2 | 14 |
| Cottonwood Creek (Niobrara River tributary) | 26.8 | 44 |
| Cottonwood Creek (Republican River tributary) | 17.4 | 17 |
| Cottonwood Creek (South Loup River tributary) | 22.2 | 22 |
| Cottonwood Creek (Wahoo Creek tributary) | 25 | 25 |
| Cow Creek | 13.8 | 14 |
| Cow Creek (Lodgepole Creek (South Platte River tributary)) | 37.5 | 38 |
| Craven Creek | 14.7 | 15 |
| Crooked Creek | 21.8 | 22 |
| Crooked Creek (Republican River tributary) | 21.5 | 22 |
| Crow Creek | 9.3 | 9 |
| Crum Creek | 15.7 | 16 |
| Cub Creek | 43.8 | 44 |
| Cuming Creek | 38.3 | 38 |
| Daily Branch | 13.6 | 14 |
| Dane Creek | 18.5 | 19 |
| Davis Creek | 32.8 | 33 |
| Dead Horse Creek | 20.2 | 20 |
| Deep Creek | 18.2 | 18 |
| Deep Holes Creek | 23.4 | 23 |
| Deer Creek (Elkhorn River tributary) | 15.2 | 15 |
| Deer Creek (Middle Loup River tributary) | 22.4 | 22 |
| Deer Creek (Niobrara River tributary) | 19.6 | 20 |
| Deer Creek (Republican River tributary) | 74 | 74 |
| Deer Creek - South Branch (South Logan Creek tributary) | 20.9 | 21 |
| Deer Creek (South Logan Creek tributary) | 23.6 | 45 |
| Deer Creek (South Loup River tributary) | 23 | 23 |
| Dirty Creek | 15.8 | 16 |
| Dismal River | 72 | 162 |
| Dismal River - North Fork | 38.8 | 39 |
| Dismal River - South Fork | 23 | 23 |
| Dog Creek | 27.8 | 28 |
| Driftwood Creek | 37.9 | 75 |
| Driftwood Creek - North Fork | 28.8 | 29 |
| Driftwood Creek - South Fork | 8 | 8 |
| Dry Cedar Creek | 18.3 | 18 |
| Dry Creek | 52.8 | 53 |
| Dry Sandy Creek | 35.1 | 35 |
| Dry Spottedtail Creek | 23 | 23 |
| Duck Creek (Sand Creek (Wahoo Creek tributary)) | 14.1 | 14 |
| Eagle Creek | 21.3 | 59 |
| Eagle Creek - East Branch | 16.8 | 17 |
| Eagle Creek - Middle Branch | 21.3 | 21 |
| East Ash Creek | 15 | 15 |
| East Bow Creek | 20.2 | 20 |
| Elder Creek | 28 | 28 |
| Elk Creek (Little Blue River tributary) | 34.4 | 34 |
| Elk Creek (Missouri River tributary) | 35.8 | 50 |
| Elk Creek (Oak Creek (Salt Creek tributary)) | 16.2 | 16 |
| Elk Creek (Prairie Dog Creek tributary) | 0.6 | 1 |
| Elk Creek (Republican River tributary) | 40.2 | 40 |
| Elk Creek (South Loup River tributary) | 31.5 | 32 |
| Elkhorn River | 286.8 | 1,900 |
| Elkhorn River - North Branch | 28.4 | 28 |
| Elkhorn River - North Fork | 81.3 | 200 |
| Elkhorn River - North Fork - West Branch | 19.1 | 19 |
| Elkhorn River - South Fork | 28.4 | 28 |
| Elkhorn River - South Fork | 76.2 | 76 |
| Elm Creek (North Loup River tributary) | 16.9 | 17 |
| Elm Creek (Platte River tributary) | 39.5 | 164 |
| Elm Creek (Republican River tributary) | 27.6 | 28 |
| Elm Creek (Shell Creek tributary) | 14.9 | 15 |
| Elm Creek (Spring Creek (Republican River tributary)) | 16.4 | 16 |
| Evergreen Creek | 40.4 | 40 |
| Fairfield Creek | 32.5 | 33 |
| Farmers Creek | 15.9 | 16 |
| Fish Creek | 18.7 | 19 |
| Flag Creek | 29.1 | 29 |
| Flat Creek (Big Blue River - West Fork tributary) | 30.9 | 31 |
| Flat Creek (Little Blue River tributary) | 16.2 | 16 |
| Foster Creek | 14.4 | 14 |
| Fourmile Creek (Big Nemaha River - South Fork tributary) | 14.7 | 15 |
| Fourmile Creek (Platte River tributary) | 15.7 | 16 |
| Fox Creek | 24 | 24 |
| Freeman Creek | 17.3 | 17 |
| French Creek | 19.5 | 20 |
| Frenchman Creek | 140.3 | 327 |
| Giles Creek | 17.6 | 18 |
| Goose Creek | 68.5 | 69 |
| Gordon Creek | 154.1 | 154 |
| Gracie Creek | 16.9 | 17 |
| Greenwood Creek | 29 | 29 |
| Haines Branch | 20.1 | 20 |
| Halfbreed Creek | 14 | 14 |
| Haskell Creek | 17.6 | 18 |
| Hat Creek | 45.2 | 240 |
| Hawthorne Creek | 16.8 | 17 |
| Hays Creek | 24.2 | 24 |
| Hay Springs Creek | 43.4 | 43 |
| Hemingford Creek | 42.7 | 43 |
| Hickman Branch | 17.4 | 17 |
| Hicks Creek | 12.6 | 13 |
| Holt Creek (Elkhorn River tributary) | 60.5 | 61 |
| Holt Creek (Keya Paha River tributary) | 26.6 | 27 |
| Hooker Creek | 16.2 | 16 |
| Hooper Creek | 23.6 | 24 |
| Horse Creek (Loup River tributary) | 18.2 | 18 |
| Horse Creek (North Platte River tributary) | 7.9 | 46 |
| Horsehead Creek | 6 | 6 |
| Horseshoe Creek | 4.4 | 4 |
| Howe Creek | 17.5 | 18 |
| Humbug Creek | 22.2 | 38 |
| Humbug Creek - South Branch | 15.4 | 15 |
| Indian Creek (Big Blue River tributary) | 28.6 | 29 |
| Indian Creek (Big Blue River - West Fork tributary) | 45.2 | 45 |
| Indian Creek (Hat Creek tributary) | 29 | 32 |
| Indian Creek (North Platte River tributary) | 14.2 | 14 |
| Indian Creek (Republican River tributary) | 20.7 | 21 |
| Indian Creek (Republican River tributary) | 21.7 | 22 |
| Indian Creek (White River tributary) | 16.2 | 16 |
| Indian Springs Creek | 14.1 | 14 |
| Ives Creek | 17.7 | 18 |
| Jim Creek | 16.5 | 17 |
| Johnson Creek (Big Blue River - West Fork tributary) | 16 | 56 |
| Johnson Creek - North Fork (Big Blue River - West Fork tributary) | 21.7 | 22 |
| Johnson Creek - South Fork (Big Blue River - West Fork tributary) | 18.2 | 18 |
| Johnson Creek (Turkey Creek (Big Nemaha River - South Fork tributary)) | 20.3 | 20 |
| Joy Creek | 0 | 0 |
| Keegan Creek | 14.6 | 15 |
| Keya Paha River | 57.5 | 173 |
| Kezan Creek | 14.8 | 15 |
| Kiowa Creek | 20.1 | 20 |
| Lake Creek | 16.6 | 17 |
| Larrabee Creek | 25.4 | 25 |
| Lawrence Fork | 36.4 | 36 |
| Leander Creek | 26.2 | 26 |
| Liberty Creek | 31 | 31 |
| Lillian Creek | 23.9 | 24 |
| Limekiln Creek | 12.1 | 12 |
| Lincoln Creek | 143.8 | 163 |
| Little Bazile Creek | 33.2 | 33 |
| Little Blackwood Creek | 27.4 | 27 |
| Little Blue River | 205.3 | 1,086 |
| Little Bordeaux Creek | 25.6 | 26 |
| Little Cedar Creek | 20.5 | 21 |
| Little Cottonwood Creek (Republican River tributary) | 13.8 | 14 |
| Little Cottonwood Creek (White River tributary) | 29.4 | 64 |
| Little Logan Creek | 18.6 | 19 |
| Little Muddy Creek | 18.9 | 19 |
| Little Nemaha River | 77.3 | 243 |
| Little Nemaha River - North Fork | 36.5 | 37 |
| Little Nemaha River - South Fork | 41.4 | 41 |
| Little Papillion Creek | 18.3 | 18 |
| Little Salt Creek | 19.8 | 20 |
| Little Sandy Creek | 57.7 | 58 |
| Little Sandy Creek | 36.6 | 55 |
| Lodgepole Creek (South Platte River tributary) | 180.7 | 218 |
| Logan Creek Dredge | 80.5 | 314 |
| Lone Tree Creek | 47.4 | 78 |
| Long Branch | 25.6 | 26 |
| Long Pine Creek | 42.3 | 117 |
| Looking Glass Creek | 27.6 | 28 |
| Loseke Creek | 32 | 47 |
| Lost Creek (Keya Paha River tributary) | 11.9 | 12 |
| Loup River | 70.9 | 3,313 |
| Lute Creek | 2.1 | 2 |
| Madden Creek | 11 | 11 |
| Maple Creek | 31.6 | 110 |
| Maple Creek - East Fork | 32.6 | 33 |
| Maple Creek - West Fork | 45.7 | 46 |
| Medicine Creek (Niobrara River tributary) | 25.3 | 25 |
| Medicine Creek (Republican River tributary) | 95.8 | 192 |
| Meridian Creek | 25.2 | 44 |
| Methodist Creek | 16.8 | 17 |
| Middle Creek (Logan Creek Dredge tributary) | 29.5 | 30 |
| Middle Creek (Pumpkin Creek tributary) | 14.7 | 15 |
| Middle Creek (Republican River tributary) | 17.7 | 18 |
| Middle Creek (Salt Creek tributary) | 25.5 | 41 |
| Middle Creek - South Branch (Salt Creek tributary) | 15.2 | 15 |
| Middle Logan Creek | 23.3 | 23 |
| Middle Loup River | 218.8 | 1,604 |
| Middle Loup River - Middle Branch | 53.8 | 54 |
| Middle Loup River - North Branch | 73.6 | 127 |
| Middle Loup River - South Branch | 48.2 | 48 |
| Middle Oak Creek | 19.8 | 20 |
| Milrose Creek | 17.5 | 18 |
| Minnechaduza Creek | 53.3 | 56 |
| Mira Creek | 11.1 | 48 |
| Mira Creek - North Branch | 25.3 | 25 |
| Mira Creek - South Branch | 11.4 | 11 |
| Mission Creek (Big Blue River tributary) | 7.9 | 8 |
| Missouri River | 383.8 | 19,067 |
| Moores Creek | 24.2 | 24 |
| Mud Creek (Big Blue River tributary) | 30.7 | 45 |
| Mud Creek (Cedar River tributary) | 14.5 | 15 |
| Mud Creek - South Branch (South Loup River tributary) | 14.1 | 14 |
| Mud Creek (South Loup River tributary) | 99 | 214 |
| Muddy Creek (Big Nemaha River tributary) | 51.8 | 85 |
| Muddy Creek - East Branch (Republican River tributary) | 31.4 | 31 |
| Muddy Creek (Little Nemaha River tributary) | 18.5 | 19 |
| Muddy Creek (Republican River tributary) | 30.9 | 31 |
| Muddy Creek (Republican River tributary) | 58.9 | 148 |
| Munson Creek | 20.5 | 21 |
| Ninemile Creek | 22.7 | 23 |
| Niobrara River | 498 | 2,334 |
| North Antelope Creek | 16.6 | 17 |
| North Blackbird Creek | 13.9 | 14 |
| North Brushy Creek | 14 | 14 |
| North Logan Creek | 21.5 | 22 |
| North Loup River | 271.1 | 901 |
| North Oak Creek | 33.9 | 34 |
| North Omaha Creek | 18.7 | 19 |
| North Platte River | 215.9 | 879 |
| North Plum Creek | 27.1 | 27 |
| North Taylor Creek | 13.9 | 14 |
| Norwegian Bow Creek | 27.1 | 27 |
| Oak Creek (Little Blue River tributary) | 22.1 | 22 |
| Oak Creek (Middle Loup River tributary) | 70.2 | 70 |
| Oak Creek (Salt Creek tributary) | 47.8 | 118 |
| Olive Branch | 13.8 | 14 |
| Omaha Creek | 14.3 | 57 |
| Omaha Creek Ditch | 4 | 61 |
| Otoe Creek | 24.6 | 25 |
| Otter Creek | 13.9 | 14 |
| Owl Creek | 18.3 | 38 |
| Oxbow Creek | 19.1 | 19 |
| Papillion Creek | 15.6 | 101 |
| Pawnee Creek (Little Blue River tributary) | 51.6 | 52 |
| Pawnee Creek (Platte River tributary) | 21.2 | 21 |
| Pearl Creek | 24.6 | 25 |
| Pebble Creek (Cottonwood Creek (Niobrara River tributary)) | 16.8 | 17 |
| Pebble Creek (Elkhorn River tributary) | 41.2 | 91 |
| Pebble Creek - North Branch (Elkhorn River tributary) | 14.5 | 15 |
| Pebble Creek - South Branch (Elkhorn River tributary) | 12.8 | 13 |
| Pepper Creek | 26.7 | 27 |
| Peterson Creek | 15.5 | 16 |
| Pierce Creek | 16.2 | 16 |
| Pine Creek | 33.3 | 33 |
| Platte River | 318.5 | 8,462 |
| Plum Creek (Big Blue River tributary) | 30.4 | 45 |
| Plum Creek (Big Blue River tributary) | 32 | 32 |
| Plum Creek (Elkhorn River tributary) | 40.1 | 40 |
| Plum Creek (Loup River tributary) | 51.8 | 52 |
| Plum Creek (Niobrara River tributary) | 46.9 | 142 |
| Plum Creek - North Fork (Niobrara River tributary) | 38.1 | 38 |
| Plum Creek (Platte River tributary) | 80.9 | 108 |
| Plum Creek - South Fork (Niobrara River tributary) | 16.8 | 17 |
| Point of Rocks Creek | 35.4 | 83 |
| Point of Rocks Creek - North Branch | 29.8 | 30 |
| Point of Rocks Creek - South Branch | 18.1 | 18 |
| Pole Creek | 1 | 1 |
| Ponca Creek | 70.8 | 90 |
| Pony Creek | 5.4 | 5 |
| Prairie Creek (Big Blue River tributary) | 25.8 | 26 |
| Prairie Creek (Platte River tributary) | 137.7 | 191 |
| Prairie Dog Creek | 20.8 | 21 |
| Pumpkin Creek | 103.1 | 213 |
| Rae Creek | 14.5 | 15 |
| Randall Creek | 3.4 | 3 |
| Rebecca Creek | 7.6 | 8 |
| Redbird Creek | 44.3 | 67 |
| Red Otter Creek | 14.6 | 15 |
| Red Willow Creek | 24.1 | 24 |
| Red Willow Creek | 126.2 | 126 |
| Republican River | 292.1 | 2,438 |
| Republican River - North Fork | 10.1 | 10 |
| Republican River - South Fork | 4.4 | 6 |
| Riddle Creek | 0.1 | 0 |
| Rifle Creek | 17.4 | 17 |
| Robidoux Creek | 0.3 | 0 |
| Rock Creek | 19.1 | 19 |
| Rock Creek (Big Nemaha River - South Fork tributary) | 10.6 | 11 |
| Rock Creek (Elkhorn River tributary) | 19.2 | 19 |
| Rock Creek (Little Blue River tributary) | 16.4 | 16 |
| Rock Creek (Little Nemaha River tributary) | 18.7 | 19 |
| Rock Creek (Middle Loup River tributary) | 13.8 | 14 |
| Rock Creek - North Fork (Salt Creek tributary) | 14.6 | 15 |
| Rock Creek (Republican River tributary) | 17.9 | 18 |
| Rock Creek (Salt Creek tributary) | 36.2 | 51 |
| Rope Creek | 23.3 | 23 |
| Rose Creek (Little Blue River tributary) | 51.5 | 67 |
| Roys Creek | 1.4 | 1 |
| Rush Creek (Bohemian Creek tributary) | 15 | 15 |
| Rush Creek (Niobrara River tributary) | 34 | 77 |
| Rush Creek (North Platte River tributary) | 87.5 | 88 |
| Salt Creek | 69.4 | 571 |
| Sand Canyon Creek | 42.2 | 42 |
| Sand Creek (Elkhorn River tributary) | 14 | 14 |
| Sand Creek (Little Blue River tributary) | 39.3 | 64 |
| Sand Creek (Little Cottonwood Creek tributary) | 20.9 | 21 |
| Sand Creek (Republican River tributary) | 14.6 | 15 |
| Sand Creek - South Branch (Little Blue River tributary) | 24.8 | 25 |
| Sand Creek (South Loup River tributary) | 18.9 | 19 |
| Sand Creek (South Loup River tributary) | 18.4 | 18 |
| Sand Creek (South Loup River tributary) | 15 | 15 |
| Sand Creek (Spring Creek (Stinking Water Creek tributary)) | 11.8 | 12 |
| Sand Creek (Wahoo Creek tributary) | 32.4 | 47 |
| Sand Draw | 22.6 | 23 |
| Sappa Creek | 70.6 | 175 |
| Schaad Creek | 15.1 | 15 |
| Schlagel Creek | 19.5 | 20 |
| School Creek | 17.5 | 18 |
| School Creek | 50.7 | 51 |
| Scott Creek | 18.3 | 18 |
| Shadley Creek | 5.5 | 6 |
| Shaw Creek | 14.6 | 15 |
| Sheep Creek (North Platte River tributary) | 30.7 | 31 |
| Shell Creek | 111.3 | 173 |
| Sicily Creek | 19.7 | 20 |
| Silver Creek (Pebble Creek tributary) | 22.2 | 22 |
| Silver Creek (Platte River tributary) | 42.7 | 43 |
| Silver Creek (Prairie Creek (Platte River tributary)) | 29.5 | 30 |
| Silver Creek (Republican River tributary) | 21.4 | 21 |
| Silver Valley Creek | 15.1 | 15 |
| Skeedee Creek | 15.7 | 16 |
| Skull Creek (Calamus River tributary) | 22.9 | 23 |
| Skull Creek (Platte River tributary) | 29.6 | 30 |
| Snake Creek | 104.2 | 236 |
| Snake Creek - North Branch | 17.4 | 17 |
| Snake Creek - South Branch | 30.8 | 31 |
| Snake River | 125.7 | 226 |
| Soldier Creek | 23.8 | 24 |
| South Antelope Creek | 19 | 19 |
| South Blackbird Creek | 29.7 | 30 |
| South Brushy Creek | 11.7 | 12 |
| South Creek | 28.4 | 42 |
| South Logan Creek | 30.5 | 103 |
| South Loup River | 221.6 | 696 |
| South Omaha Creek | 10.6 | 24 |
| South Papillion Creek | 11.7 | 12 |
| South Platte River | 91.7 | 310 |
| Sowbelly Creek | 20.3 | 20 |
| Spring Branch | 18.9 | 19 |
| Spring Creek - East Branch (Loup River tributary) | 14.4 | 14 |
| Spring Creek (Keya Paha River tributary) | 23.6 | 24 |
| Spring Creek (Little Blue River tributary) | 54.2 | 54 |
| Spring Creek (Little Cottonwood Creek (White River tributary)) | 13.6 | 14 |
| Spring Creek (Little Nemaha River tributary) | 26.8 | 27 |
| Spring Creek (Loup River tributary) | 50.8 | 88 |
| Spring Creek (Medicine Creek (Republican River tributary)) | 14 | 14 |
| Spring Creek (Middle Loup River tributary) | 14.9 | 15 |
| Spring Creek (Niobrara River tributary) | 15.3 | 15 |
| Spring Creek (Platte River tributary) | 69.3 | 69 |
| Spring Creek (Republican River tributary) | 40.4 | 75 |
| Spring Creek (South Loup River tributary) | 24 | 24 |
| Spring Creek (Stinking Water Creek tributary) | 85.1 | 97 |
| Spring Creek (Turkey Creek (Big Blue River tributary)) | 17.5 | 18 |
| Spring Creek - West Branch (Loup River tributary) | 22.4 | 22 |
| Squaw Creek (Hat Creek tributary) | 29.4 | 29 |
| Squaw Creek (White Clay Creek (White River tributary)) | 14 | 14 |
| St. Clair Creek | 17.2 | 17 |
| Steel Creek | 19.6 | 20 |
| Steer Creek | 30.6 | 31 |
| Stevens Creek | 22.9 | 23 |
| Stinking Water Creek | 75.7 | 173 |
| Swan Creek | 15.8 | 76 |
| Swan Creek - North Fork | 31.4 | 31 |
| Swan Creek - South Fork | 28.4 | 28 |
| Swartz Creek | 21.4 | 21 |
| Sweet Creek | 33.5 | 34 |
| Taylor Creek | 10.8 | 25 |
| Thirtytwo Mile Creek | 29.7 | 61 |
| Thirtytwo Mile Creek - West Branch | 31.2 | 31 |
| Thompson Creek | 8.1 | 63 |
| Thompson Creek - West Branch | 54.7 | 55 |
| Timber Creek | 15.4 | 72 |
| Timber Creek - North Branch | 29.5 | 30 |
| Timber Creek - South Branch | 26.9 | 27 |
| Todd Creek | 14.8 | 15 |
| Tracy Creek | 18.4 | 18 |
| Trunk Butte Creek | 18.6 | 19 |
| Turkey Creek (Big Blue River tributary) | 133.7 | 271 |
| Turkey Creek (Big Nemaha River - South Fork tributary) | 41.8 | 97 |
| Turkey Creek - East Branch (Republican River tributary) | 14.3 | 14 |
| Turkey Creek (Middle Loup River tributary) | 41.5 | 42 |
| Turkey Creek (Niobrara River tributary) | 17.1 | 17 |
| Turkey Creek - North Fork (Big Blue River tributary) | 19.1 | 19 |
| Turkey Creek (Republican River tributary) | 23.7 | 54 |
| Turkey Creek (Republican River tributary) | 50.3 | 50 |
| Turkey Creek - South Fork (Big Blue River tributary) | 25 | 25 |
| Turkey Creek - West Branch (Big Nemaha River - South Fork tributary) | 19 | 34 |
| Turkey Creek - West Branch (Republican River tributary) | 15.7 | 16 |
| Turtle Creek | 7.7 | 50 |
| Turtle Creek (Elkhorn River - North Fork tributary) | 13.6 | 14 |
| Turtle Creek - North Branch | 24 | 24 |
| Turtle Creek - South Branch | 18.2 | 18 |
| Union Creek | 50.3 | 150 |
| Union Creek - North Fork | 18.1 | 18 |
| Union Creek - South Fork | 13.3 | 13 |
| Verdigre Creek | 24.7 | 136 |
| Verdigre Creek - East Branch | 16.7 | 17 |
| Verdigre Creek - Middle Branch | 29 | 29 |
| Verdigre Creek - North Branch | 41.4 | 41 |
| Verdigre Creek - South Branch | 24.3 | 24 |
| Victoria Creek | 23.4 | 23 |
| Vorhees Creek | 18.2 | 18 |
| Wagner Creek | 20.7 | 21 |
| Wahoo Creek | 56.4 | 165 |
| Wahoo Creek - North Fork | 17.2 | 17 |
| Wallace Creek | 23 | 23 |
| Walnut Creek (Big Nemaha River tributary) | 3.8 | 4 |
| Walnut Creek (Little Blue River tributary) | 17.4 | 17 |
| Walnut Creek (Little Sandy Creek tributary) | 18.7 | 19 |
| Walnut Creek (Republican River tributary) | 12.3 | 12 |
| Warbonnet Creek | 25 | 45 |
| Weeping Water Creek | 55.6 | 85 |
| Weeping Water Creek - South Branch | 29 | 29 |
| Weigand Creek | 21.8 | 22 |
| West Ash Creek | 15.3 | 15 |
| West Birdwood Creek | 24.4 | 24 |
| West Bow Creek | 44.6 | 45 |
| West Buffalo Creek | 19.2 | 19 |
| West Muddy Creek | 29.9 | 30 |
| West Papillion Creek | 16.4 | 16 |
| Whisky Creek | 18.8 | 19 |
| Whistle Creek | 18.3 | 18 |
| White Clay Creek (White River tributary) | 15.7 | 30 |
| White Clay Creek (White River tributary) | 36.5 | 87 |
| Whitehead Creek | 19.3 | 19 |
| White Horse Creek | 21.7 | 22 |
| White River | 138.8 | 767 |
| Whitetail Creek | 17.6 | 18 |
| Wildcat Creek | 22.1 | 46 |
| Wild Horse Creek | 28.4 | 28 |
| Willow Creek (Elkhorn River - North Fork tributary) | 54.2 | 54 |
| Willow Creek (Long Pine Creek tributary) | 14 | 14 |
| Willow Creek (Niobrara River tributary) | 15.9 | 16 |
| Willow Creek (Pumpkin Creek tributary) | 15.4 | 15 |
| Willow Creek (Republican River tributary) | 23.7 | 24 |
| Winters Creek | 21.8 | 22 |
| Wolf Creek | 24.1 | 24 |
| Wolf Creek - East Prong (White Clay Creek (White River tributary)) | 2.6 | 3 |
| Wolf Creek - South Prong (White Clay Creek (White River tributary)) | 7.6 | 8 |
| Wood River | 219.1 | 219 |
| Wounded Knee Creek | 15.5 | 16 |
| Yankee Creek | 23.4 | 23 |
