| Agua Chiquita Creek | 37.2 | 37 |
| Aguilar Creek | 15.5 | 16 |
| Alamocita Creek | 27.2 | 27 |
| Alamo Creek | 6.7 | 21 |
| Alamosa Creek | 14.1 | 14 |
| Alamosa Creek (Rio Grande tributary) | 62.3 | 62 |
| Alamosa Creek (Taiban Creek tributary) | 58.2 | 58 |
| Alamos Creek | 31.2 | 31 |
| Alona Creek | 9.2 | 27 |
| Amargo Creek | 35.1 | 53 |
| Animas River | 36 | 36 |
| Apache Creek (East Rita Blanca Creek tributary) | 38 | 38 |
| Apache Creek (Gila River tributary) | 11 | 11 |
| Archuleta Creek | 14.7 | 15 |
| Arroyo Chico | 33.6 | 63 |
| Arroyo del Macho | 96.2 | 136 |
| Atarque Creek | 46.9 | 47 |
| Baca Spring Creek | 22.6 | 23 |
| Banderitas Creek | 16.6 | 17 |
| Barranca Creek | 37.9 | 38 |
| Bear Creek | 33.7 | 34 |
| Beaver Creek | 14.6 | 15 |
| Berrenda Creek | 35.8 | 36 |
| Berrendo Creek | 17.4 | 17 |
| Bitter Creek (Gila River tributary) | 6.3 | 6 |
| Black Canyon Creek | 25.6 | 26 |
| Black Creek | 2.9 | 3 |
| Blanca Creek | 20.1 | 20 |
| Blue Creek | 37.3 | 37 |
| Bluewater Creek | 55.4 | 55 |
| Bob Wells Creek | 19.2 | 19 |
| Buckhorn Creek | 23.9 | 24 |
| Bueyeros Creek | 17.5 | 18 |
| Bull Canyon Creek | 22.2 | 22 |
| Bull Creek | 17.1 | 17 |
| Bushnell Creek | 15.3 | 15 |
| Cabresto Creek | 18 | 18 |
| Cabresto Creek | 25 | 25 |
| Cameron Creek | 24 | 24 |
| Campbell Blue Creek | 0.3 | 0 |
| Cañada Ancha | 14.8 | 15 |
| Cañada Bonita | 24.9 | 25 |
| Cañada de la Entranas | 19.5 | 20 |
| Cañada de Ojo Sarco | 14.6 | 15 |
| Cañada los Apaches | 29.9 | 30 |
| Canadian River (Arkansas River tributary) | 341.9 | 2,695 |
| Canyon Creek | 14.4 | 14 |
| Carrizo Creek (Arroyo del Macho tributary) | 19.4 | 19 |
| Carrizo Creek (Canadian River (Arkansas River tributary)) | 19.3 | 19 |
| Carrizo Creek (Rita Blanca Creek tributary) | 82 | 124 |
| Carrizozo Creek | 46.4 | 46 |
| Carros Creek | 20.8 | 21 |
| Cebolla Creek | 20.7 | 21 |
| Cedar Creek | 23.9 | 24 |
| Centerfire Creek | 17.1 | 17 |
| Cerrososo Creek | 37 | 37 |
| Chaco River | 106 | 171 |
| Charco Creek | 37.5 | 38 |
| Cherisco Creek | 17.3 | 17 |
| Cherry Creek | 19.6 | 20 |
| Chical Creek | 17.4 | 17 |
| Chico Creek | 35.4 | 35 |
| Chicorica Creek | 28.1 | 78 |
| Chloride Creek | 16.4 | 16 |
| Cibolo Creek | 16.2 | 16 |
| Cienega Creek | 14.4 | 14 |
| Cieneguilla Creek | 19.4 | 19 |
| Cimarron River | 69.2 | 322 |
| Coal Creek | 15.3 | 15 |
| Coal Creek | 3.1 | 3 |
| Conchas River | 84 | 119 |
| Corazon Creek | 21.1 | 21 |
| Corrumpa Creek | 74.9 | 137 |
| Corrumpa Creek - North Branch | 15 | 15 |
| Costilla Creek | 40.9 | 41 |
| Cottonwood Creek | 17.5 | 54 |
| Cow Creek | 30.1 | 47 |
| Coyote Creek (Little Colorado River tributary) | 3.8 | 4 |
| Coyote Creek (Mora River tributary) | 46.2 | 63 |
| Coyote Creek (Navajo River tributary) | 0.6 | 1 |
| Coyote Creek (Rio Puerco (Rio Chama tributary)) | 15 | 15 |
| Cramer Creek | 6 | 6 |
| Crooked Creek | 41.9 | 42 |
| Crow Creek | 32.9 | 33 |
| Cuchillo Negro Creek | 40.5 | 93 |
| Cuervo Creek | 46.6 | 64 |
| Curtis Creek | 19.4 | 19 |
| Deep Creek | 18.5 | 19 |
| Delaware River | 8.3 | 8 |
| Diamond Creek | 27.2 | 45 |
| Dry Cimarron River | 110.8 | 169 |
| Duck Creek | 23.1 | 65 |
| Eagle Creek | 20.3 | 39 |
| Eagle Creek | 70 | 70 |
| El Rito | 36 | 36 |
| Embudo Creek | 12.8 | 86 |
| Encinal Creek | 16.2 | 16 |
| Entrania Creek | 17.3 | 17 |
| Escondido Creek | 10.8 | 63 |
| Esteros Creek | 26.1 | 26 |
| Farmington Glade | 26 | 26 |
| Frances Creek | 20.5 | 21 |
| Galisteo Creek | 55.3 | 55 |
| Gallegos Creek | 18.3 | 18 |
| Gallegos Creek | 20.1 | 20 |
| Gallinas Creek | 30 | 45 |
| Gallinas River | 63.6 | 124 |
| Garcia Creek | 27.3 | 27 |
| Gila River | 106.5 | 969 |
| Gila River - East Fork | 27.6 | 116 |
| Gila River - Middle Fork | 37 | 66 |
| Gila River - West Fork | 37.2 | 122 |
| Harden Cienega Creek | 5.6 | 6 |
| Indian Creek (Chaco River tributary) | 49.5 | 50 |
| Indian Creek (Gila River - Middle Fork tributary) | 14.5 | 15 |
| Indian Creek (Rocky Arroyo tributary) | 17.6 | 18 |
| Jaralosa Creek | 22 | 22 |
| Jemez River | 49.1 | 199 |
| Jemez River - East Fork | 22.2 | 22 |
| La Cinta Creek | 71.4 | 116 |
| Lagartija Creek | 15 | 15 |
| La Jara Creek | 50.4 | 50 |
| La Jara Creek | 16.5 | 17 |
| La Jencia Creek | 24.8 | 25 |
| La Manga Creek | 27.5 | 28 |
| La Plata River | 26.1 | 26 |
| Largo Creek | 67.4 | 152 |
| Las Animas Creek | 40.6 | 41 |
| Latir Creek | 15.3 | 15 |
| LeFebres Creek | 13.8 | 14 |
| Leon Creek | 17.8 | 18 |
| Little Creek (Eagle Creek tributary) | 18.7 | 19 |
| Little Creek (Gila River - West Fork tributary) | 18.5 | 19 |
| Long Creek (Purgatoire River tributary) | 9.4 | 9 |
| Los Pinos River | 13.6 | 14 |
| Mancos River | 4.1 | 4 |
| Mangas Creek | 28.5 | 29 |
| Mangas Creek | 25.2 | 25 |
| Manuelitas Creek | 19.3 | 19 |
| Mesita Creek | 13.6 | 14 |
| Middle Ponil Creek | 23.9 | 24 |
| Mimbres River | 99.7 | 254 |
| Mimbres River - East Fork | 15 | 15 |
| Mineral Creek | 17.3 | 17 |
| Minneosa Creek | 28.2 | 28 |
| Mogollon Creek | 29.8 | 30 |
| Monia Creek | 26.2 | 63 |
| Mora River | 127.7 | 302 |
| Moras Creek | 17.9 | 18 |
| Mule Creek | 14.1 | 14 |
| Mule Creek | 18.7 | 51 |
| Navajo River | 18 | 72 |
| Negrito Creek | 13 | 43 |
| Negrito Creek - North Fork | 13.2 | 13 |
| Negrito Creek - South Fork | 16.8 | 17 |
| North Cottonwood Creek | 26.2 | 26 |
| North Percha Creek | 17.8 | 18 |
| North Ponil Creek | 26.6 | 27 |
| North Seco Creek | 15.6 | 16 |
| North Seven Rivers | 21 | 21 |
| Oak Grove Creek | 14.6 | 15 |
| Ocate Creek | 54.6 | 110 |
| Pajarito Creek | 75.5 | 118 |
| Palomas Creek | 24 | 90 |
| Palomas Creek - North Fork | 22.9 | 23 |
| Palomas Creek - South Fork | 23.5 | 24 |
| Patos Creek | 20.4 | 20 |
| Pecos River | 527.5 | 2,155 |
| Pedroso Creek | 22.4 | 22 |
| Percha Creek | 25.7 | 44 |
| Perico Creek | 47.7 | 48 |
| Pinabetes Creek | 45.6 | 63 |
| Pine Cienega Creek | 17.9 | 32 |
| Plaza Larga Creek | 31.3 | 134 |
| Pojoaque Creek | 6.6 | 36 |
| Pojoaque River | 5.1 | 56 |
| Ponil Creek | 18.7 | 122 |
| Poverty Creek | 21.1 | 36 |
| Pueblo Creek | 24.2 | 24 |
| Puerco River | 78.4 | 116 |
| Puerco River - South Fork | 35.1 | 35 |
| Punta de Agua Creek | 1 | 450 |
| Rafael Creek | 27.8 | 28 |
| Raton Creek | 18.7 | 19 |
| Rayado Creek | 44.7 | 90 |
| Red River | 27.2 | 45 |
| Revuelto Creek | 42.8 | 177 |
| Rinconada Creek | 16.9 | 17 |
| Rio Bonito | 39.8 | 58 |
| Rio Brazos | 26.7 | 27 |
| Rio Cebolla | 23.4 | 23 |
| Rio Cebolla | 23.5 | 24 |
| Rio Chama | 120.2 | 524 |
| Rio Chamita | 13.9 | 14 |
| Rio Chiquito | 19.1 | 19 |
| Rio Chupadero | 14.8 | 15 |
| Rio de Arenas | 16.8 | 17 |
| Rio de las Trampas | 18.8 | 19 |
| Rio de las Vacas | 26.9 | 27 |
| Rio del Oso | 15.9 | 16 |
| Rio de los Pinos | 21.3 | 21 |
| Rio del Plano | 32.1 | 32 |
| Rio de Truchas | 23 | 23 |
| Rio Felix | 94.6 | 164 |
| Rio Fernando de Taos | 23.5 | 24 |
| Rio Gallina | 37.8 | 38 |
| Rio Grande | 475.2 | 5,238 |
| Rio Grande del Rancho | 28 | 62 |
| Rio Guadalupe | 13.7 | 64 |
| Rio Hondo | 19.2 | 19 |
| Rio Hondo | 86.4 | 260 |
| Rio Lucero | 17.2 | 17 |
| Rio Medio | 19.9 | 20 |
| Rio Moquino | 4.2 | 40 |
| Rio Mora | 20.4 | 20 |
| Rio Nambe | 14.1 | 14 |
| Rio Nutria | 37.8 | 38 |
| Rio Nutrias | 41.1 | 41 |
| Rio Ojo Caliente | 24.6 | 106 |
| Rio Paguate | 24.6 | 64 |
| Rio Peñasco | 116.5 | 209 |
| Rio Pescado | 43.9 | 65 |
| Rio Pueblo | 25.6 | 26 |
| Rio Pueblo de Taos | 32.2 | 135 |
| Rio Puerco (Rio Chama tributary) | 25.5 | 41 |
| Rio Puerco (Rio Grande tributary) | 224.7 | 518 |
| Rio Quemado | 15.5 | 16 |
| Rio Ruidoso | 36.1 | 75 |
| Rio Salado (Jemez River tributary) | 31.2 | 31 |
| Rio Salado (Rio Grande tributary) | 83.2 | 202 |
| Rio San Antonio | 32.8 | 54 |
| Rio San Jose | 83.6 | 181 |
| Rio Santa Barbara | 13.7 | 14 |
| Rio Tesuque | 15.5 | 16 |
| Rio Tusas | 46.3 | 46 |
| Rio Vallecitos | 35 | 35 |
| Rito Creek | 21.9 | 85 |
| Rito de la Olla | 14.5 | 15 |
| Rito de los Frijoles | 14.4 | 14 |
| Rito de Tierra Amarilla | 24.9 | 25 |
| Rito Seco | 5.1 | 5 |
| Rocky Arroyo | 33.3 | 51 |
| Sacaton Creek | 18.1 | 18 |
| Salado Creek (Cimarron River tributary) | 20.9 | 21 |
| Salado Creek (Palomas Creek tributary) | 19.6 | 20 |
| Salado Creek (Pecos River tributary) | 32.8 | 33 |
| Salado Creek (Rio Bonito tributary) | 18.6 | 19 |
| Salado Creek (Rio Puerco (Rio Grande tributary)) | 19.5 | 20 |
| Salitre Creek | 13.8 | 14 |
| Salt Creek | 55.6 | 228 |
| Saltpeter Creek | 17.7 | 18 |
| San Antonio Creek | 32.1 | 32 |
| Sand Creek | 17.6 | 18 |
| San Francisco River | 103.9 | 362 |
| San Ignacio Creek | 23.6 | 24 |
| San Isidro Creek | 8.1 | 13 |
| San Jon Creek | 27 | 27 |
| San Juan River | 134.3 | 579 |
| San Miguel Creek | 29.7 | 30 |
| San Simon River | 16.7 | 17 |
| Santa Clara Creek | 25.1 | 25 |
| Santa Cruz River | 12.2 | 48 |
| Santa Fe River | 50.3 | 71 |
| San Vicente Arroyo | 37.3 | 139 |
| Sapello River | 46.8 | 66 |
| Sapillo Creek | 20.5 | 21 |
| Sauz Creek | 21.4 | 21 |
| Sawmill Creek | 14 | 14 |
| Seboyeta Creek | 18.7 | 19 |
| Seboyetita Creek | 16.8 | 17 |
| Seco Creek (La Cinta Creek tributary) | 13 | 31 |
| Seco Creek (Rio Grande tributary) | 25.3 | 41 |
| Seneca Creek | 66.1 | 97 |
| Sloan Creek | 16.6 | 17 |
| South Carrizo Creek | 2.3 | 2 |
| South Cottonwood Creek | 10.6 | 11 |
| South Diamond Creek | 18.1 | 18 |
| South Ponil Creek | 15.7 | 40 |
| Spring Creek (Corrumpa Creek tributary) | 18.8 | 19 |
| Spring Creek (Pecos River tributary) | 14.6 | 15 |
| Squaw Creek | 27.3 | 27 |
| Sweetwater Creek | 25.2 | 25 |
| Taiban Creek | 20.9 | 97 |
| Taylor Creek | 17.3 | 17 |
| Tecolote Creek | 56.5 | 77 |
| Tesesquite Creek | 0.7 | 1 |
| Tierra Blanca Creek | 36.2 | 36 |
| Tierra Blanca Creek (Red River of the South - Prairie Dog Town Fork tributary) | 14.4 | 14 |
| Tinaja Creek | 26.5 | 27 |
| Tramperos Creek | 77.8 | 170 |
| Travesser Creek | 41.5 | 42 |
| Trementina Creek | 1.1 | 1 |
| Tres Hermanos Creek | 20.9 | 21 |
| Trinchera Creek (Purgatoire River tributary) | 7.5 | 8 |
| Trout Creek | 16.1 | 16 |
| Truchas Creek | 28.9 | 29 |
| Trujillo Creek | 13.4 | 40 |
| Tularosa River | 42.5 | 86 |
| Turkey Creek (Gila River tributary) | 17.6 | 18 |
| Turkey Creek (Poverty Creek tributary) | 14.5 | 15 |
| Una de Gato Creek | 31.1 | 31 |
| Urraca Creek | 18.4 | 18 |
| Van Bremmer Creek | 43.6 | 44 |
| Ventero Creek | 1.3 | 1 |
| Vermejo River | 70.2 | 132 |
| Walnut Creek | 30.2 | 30 |
| Webb Creek | 18.3 | 18 |
| Whitewater Creek (San Francisco River tributary) | 19.8 | 20 |
| Whitewater Creek (San Vicente Arroyo tributary) | 26.7 | 27 |
| Willow Creek (Canadian River (Arkansas River tributary)) | 15.9 | 16 |
| Willow Creek (Rio Chama tributary) | 37.1 | 37 |
| Wolf Creek | 23.4 | 23 |
| Yeso Creek | 47.7 | 48 |
| Zeufeldt Arroyo | 21.8 | 37 |
| Zuñi River | 34.5 | 137 |